Afipia carboxidovorans OM5 (Mississippi): OCAR_7411
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Entry
OCAR_7411 CDS
T00783
Name
(GenBank) putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCAR_7411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oca03019
]
OCAR_7411
Enzymes [BR:
oca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OCAR_7411
Messenger RNA biogenesis [BR:
oca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OCAR_7411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
ACI94514
UniProt:
B6JJC0
LinkDB
All DBs
Position
3362516..3364054
Genome browser
AA seq
512 aa
AA seq
DB search
MTSFQDFGLAETITRALSEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPI
LHRLLENRVRPQPKTCRVLVLSPTRELSGQILDSFTAYGRHLRLSATLAIGGVPMGRQVR
ALMGGVEVLVATPGRLLDLVQGNALKLGQVEFLVLDEADRMLDMGFIHDIRKIVAKLPHR
RQTLFFSATMPKDIADLAEHMLREPARVAVTPVSSTVERIAQRIIQLDSSAKPATLSELL
KSEPVNRALVFTRTKHGADKVVRSLVKAGIPAEAIHGNKSQNHRERVLAAFRNGDIRTLV
ATDIAARGIDVDGITHVVNFDLPNVPETYVHRIGRTARAGAEGTAISLVAGEENAYLRDI
ERLIRITLPREDRRTGGQSESAGQAAPRGRDNRHRHGAPRNGGAPRNGASHGRPGGSRQD
HNQDRPHKSAGRPAADGAGNPQRSNRHRPGAGPQQTRQAQPSAPRSEQTRHERTRPSQAG
QGGGIQGVAFLHRGSAPARPAEQPRRTRRPQR
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcttttcaggatttcggtctcgccgagaccatcacgcgtgccctcagtgaggag
aactacgtcacccccaccccgatccaggcccagactatcccgatcgccattaccggtcgc
gacgtgatcggcatcgcccagaccggcaccggcaagaccgcgtccttcgcgctgccgatt
ctgcaccgcctcctcgagaaccgggttcgcccgcagcccaagacctgccgcgtactggtc
ctgagcccgacccgcgaactgtcgggccagatcctcgacagcttcaccgcctatggccgc
catctgcggcttagcgcaaccctcgccatcggcggcgtgccgatgggccgtcaggtccgc
gcattgatgggcggcgtcgaagtgctggtcgcaactcccggccggctcctcgacctcgtg
caaggcaatgcgctgaagctcggccaggtcgaattcctcgtgctcgacgaagccgaccgc
atgctcgacatgggcttcatccacgacatccgcaaaatcgtggcgaagctgccgcaccgc
cgccagacgctgttcttctcggccaccatgccgaaggacatcgccgatctcgccgagcat
atgttgcgcgagccggctcgcgtggcggtgacgccggtgtcgtcgaccgtcgaacgcatc
gcccagcgcatcatccagctcgattccagcgccaagccggcaaccctgtcggaactgctg
aagtcggagccggtcaaccgggcgctggtctttacccgcaccaagcatggcgccgacaag
gtcgtgcgcagcctcgtcaaggccggcattcccgcggaggccatccacggcaacaaatcg
cagaaccatcgcgagcgcgtgctggccgcgttccgcaacggcgacatccgcacgctggtg
gcgaccgacatcgccgcccgcggcatcgacgtcgacggcatcacgcatgtcgtcaatttc
gacctgcccaacgtgccggaaacctacgtccatcgcatcggccgcaccgctcgcgcaggc
gccgagggcaccgcaatctcgcttgttgccggggaggagaatgcctatttgcgcgacatc
gaacgattgatccgcatcaccctgccgcgcgaagaccgccggaccggcggtcaatccgag
agcgccggacaggccgctccccgggggcgcgataaccgccaccgccacggcgcgcctcgt
aacggcggcgctccccgcaacggcgcctcccacggccgccccggcggctcccggcaagat
cacaaccaggaccgtccgcataaatcggccggccgcccggccgccgacggcgcgggcaac
ccgcagcgctcgaaccggcatcgccccggggcaggcccgcagcagacccggcaggcccag
ccgtccgctccccggtcagaacagacccggcatgagcgaactcgcccgtcgcaagcgggc
cagggaggcggtatacagggcgtcgctttcctccaccgcggcagcgcgcctgcgcgcccc
gcagagcaacctcgcagaacccggcgcccgcagcgctga
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