Afipia carboxidovorans OM5 (Mississippi): OCAR_7567
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Entry
OCAR_7567 CDS
T00783
Name
(GenBank) DNA polymerase I (POL I)
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca03030
DNA replication
oca03410
Base excision repair
oca03420
Nucleotide excision repair
oca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OCAR_7567
03410 Base excision repair
OCAR_7567
03420 Nucleotide excision repair
OCAR_7567
03440 Homologous recombination
OCAR_7567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oca03032
]
OCAR_7567
03400 DNA repair and recombination proteins [BR:
oca03400
]
OCAR_7567
Enzymes [BR:
oca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OCAR_7567
DNA replication proteins [BR:
oca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OCAR_7567
DNA repair and recombination proteins [BR:
oca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
OCAR_7567
NER (nucleotide excision repair)
GGR (global genome repair) factors
OCAR_7567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ACI94668
UniProt:
B6JJS4
LinkDB
All DBs
Position
3524224..3527235
Genome browser
AA seq
1003 aa
AA seq
DB search
MSKKPVSSAKTSAKPAGVKPPGKGDHVFLVDGSGYIFRAYHALPPLNRKSDGLQINAVLG
FCNMLWKLMRDMPPEDRPTHLAIVFDKSEVTFRNTIYSDYKAHRPPAPDDLIPQFALIRE
AVHAFDLPCLEQGGFEADDLIATYVREACARGASATIVSSDKDLMQLVTDCVTMYDTMKD
RRLGVPEVIEKFGVPPDKVVEVQALAGDSVDNVPGVPGIGVKTAAQLITEYGDLETLLSR
ATEIKQPKRREALIANAEKARISRQLVLLDDKVKLDVPLDELAIHEPDYRKLISFLKAME
FSTLTRRVADYAEIDASSVMPDERLKSAFAGGPSEASPQTLPLGGEPDTRARGTVSTAPV
TTLAAAPVFSPQALAASRAKDVAAAKVDRTKYATIRTADELAAWVTRAHDLGHVAIAIKA
TSFDPMQADICGIALALSPNEAAYIPLGHKKAGGGDDLFASGLADGQIEAAKVLETLTAL
LESEAVLKTGFDIKFAAVLLAQHNITLRTVDDVQLMSYALDAGRSSHDIEALAEQWLGHE
MIAHADIVGSGRNRISLDQVEIPRAAEYGAESADVIMRLWLVFKARLISERMNNVYESLE
RPLIDVLARMERRGIMIDRQVLARLSGEFAQSAARLEAEIREIAGEDINPGSPKQLGDVM
FGKMGLPGGQKTKTGAWSTTASILEDLAEAGHDFPRKILDWRQVSKLKSTYTDALPTHLL
PQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAKGHKLVSADYSQI
ELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPGEVRRRAKAINFGIIYGIS
AFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCREHGYVTTLFGRKCHYPDIK
ASNPSLRAFNERAAINARLQGTAADIIRRAMIRMEDALTQKKLAARMLLQVHDELVFEVP
DSEVDKTLPVIREVMEQAPFPATALSVPLRVDARAADNWDEAH
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaagccagtttcctccgccaaaacttccgcaaaacccgccggggtcaagcca
cccggcaagggtgaccatgtctttctggtcgatggctcgggctacatcttccgtgcctac
cacgcgctgccgccgctgaaccgcaagtccgacggcttgcagatcaacgccgtgctcggc
ttctgcaacatgctgtggaagctgatgcgcgatatgccgccggaggatcggccaacccat
ctcgccatcgtcttcgacaagtccgaagttacgttccgcaacacgatctattccgactac
aaagcacaccgcccgcctgcgccggacgacctcattccgcagttcgcgctgatccgcgaa
gcggtgcatgccttcgatttgccctgcctcgaacagggaggcttcgaggccgacgacctg
attgcgacctatgtgcgggaagcctgcgcgcgcggcgcgagcgccaccatcgtttcttcc
gacaaagacctgatgcaactcgtgaccgactgcgtcaccatgtacgacaccatgaaggac
cgccgcctcggtgtccccgaagtgatcgagaaattcggtgtgccgccggacaaggtcgtc
gaggtgcaggcgctcgcgggcgactccgtcgataacgtgccgggcgtgccgggcatcggc
gtcaagacggccgcgcaactcatcaccgaatacggcgacctcgaaacgttgctgtcgcgc
gctacggagatcaagcagccgaagcggcgcgaggcactgatcgcgaacgccgagaaggcg
cggatttcgcgccagctcgtgctgctcgacgacaaggtgaagctcgacgtgccgctcgac
gagcttgccattcacgaaccggactatcgcaagctgatctccttcctcaaggcgatggaa
ttctcgacgctgacgcgccgcgtcgctgattatgccgagatcgatgcgtcgagcgtcatg
cccgacgagcggctgaaaagcgctttcgcaggcgggccgagcgaagcttcgccacagacg
ctgccactcggcggcgagcccgacaccagagccagggggacagtctccaccgcgccagtt
acaacgctcgcggcagcgccggtattttcaccgcaggcactggcggcctcgcgcgccaag
gacgttgccgcagcgaaggtcgatcgcaccaaatacgccaccatccgcaccgcggacgaa
ctcgcggcctgggtgacgcgcgcgcatgacctcggccatgtcgcgatcgctatcaaggcg
acgtcgttcgatccgatgcaggcggacatctgcggcatcgcgcttgcgctctcgccgaat
gaggctgcctacatcccactcggccacaagaaggccggcggcggcgacgatctgttcgca
agcgggctcgcggatggacagatcgaagccgcgaaggtgctcgaaaccctgacggcactt
ctcgaatccgaagccgtgctgaaaaccggcttcgacatcaagttcgcggccgtgctgctc
gcgcagcacaacatcacgctgcgcaccgtcgatgacgtgcaactgatgtcttacgcgctc
gatgccgggcgcagctcgcatgacatcgaggcgctggccgagcaatggctcgggcacgag
atgatcgctcatgctgacattgtcggcagtgggcgcaaccgtatctctctcgatcaggtg
gagatcccacgggccgccgaatacggcgcagagtccgccgatgtcatcatgcgactgtgg
ctcgtgttcaaggcgcggctgatctccgagcgcatgaataacgtctacgagtcgctggag
cggccgctgatcgacgtgctcgcccggatggaacggcgcggcatcatgatcgaccgccag
gtgctcgcacgtctctccggtgaatttgcccaatccgccgcgcggctcgaagcggaaatc
cgcgagattgccggcgaggacatcaatcccggcagcccgaagcaacttggcgacgtgatg
ttcggcaagatgggcctgcccggcggccagaaaaccaagaccggcgcatggtcgaccacg
gcttcgattctcgaagatctcgccgaggccggccacgacttcccgcgcaagatcctcgac
tggcggcaggtgtcgaaactgaaatcgacatacacagatgcgctgccgacccaccttctg
ccgcagacgcaacgtgtccacaccacctacgcgcttgccgcgaccaccacggggcgtctg
tcgtcgaacgaaccgaacctgcagaacattccggttcgcaccgaggacggccgcaagatc
cgccgcgccttcatcgcagcgaaggggcacaagctcgtctcggccgactattcgcagatc
gaattgcggcttctcgccgagatcgccgacattccggtgctgaagcaggcgttcaaagac
ggcctcgacattcacgcgatgacggcgtcggagatgttcggcgtgccgatcaaggacatg
ccgggcgaggtgcgccgccgcgccaaggcgatcaatttcggcattatctacggcatctcg
gcgttcgggctcgccaatcagcttggcattccgcgcgaggaagccggcgcctacatcaag
aaatatttcgagcgcttcccgggcatccgtgcctacatggacgcgacgcgtgatttctgc
cgtgagcacggctatgtcaccacgctgttcggccgcaagtgccattaccccgacatcaag
gcctcgaacccgtcgctgcgtgccttcaacgaacgggctgcgatcaacgcgcgactgcaa
ggcaccgccgccgatatcatccgccgcgcgatgatccggatggaggatgcgctgacgcaa
aagaagctcgccgcgcgcatgctgctgcaggtgcatgacgagttggtgttcgaggtcccg
gacagcgaagtggacaaaacgctccccgtcatccgcgaggtgatggagcaggcccccttc
ccggcgacggcgctgtcggtgccgttacgcgtcgatgcccgcgccgccgacaattgggac
gaggcacattaa
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