Ovis canadensis (bighorn sheep): 138420099
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Entry
138420099 CDS
T11679
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ocan Ovis canadensis (bighorn sheep)
Pathway
ocan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138420099 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocan03019
]
138420099 (PATL1)
Messenger RNA biogenesis [BR:
ocan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138420099 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
138420099 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
138420099
NCBI-ProteinID:
XP_069409348
LinkDB
All DBs
Position
15:complement(90137830..90169067)
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AA seq
816 aa
AA seq
DB search
MSGKSGDRKNAICTESYNEAIVLIGKSLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGS
GAVDDDWQEAHERLAELEEKPPAAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENEL
EDPAIMRAVQTRPVLEPQPGSLNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPP
QGPEDDRDLSERALPRRSTSPVIGSPPVRAVPIGTPPKQMAVPSFNQQPVQSCSIDFPPP
ETSSWKGRPMWKILCPKPVHVRPPMPPRYPAPYGERVSPNQLCSVPNSSLLGHPFPPSVP
PVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGF
RAFFSAPPPATPPPPQQHPPGPGPHLQNLRSQTPVFRPDTTHLHPQHRRLLHQRQQQNRN
QHRTLNGAGDRGSHRSSHQDHIRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQ
NYFEKLEKLSAAEEVHGDGPRKERTKLITPQVARLEHTYKPVQFEGSLGKLTVSSVNNPR
KMIDAVVTSRSEDDETKEKQVRDKRRKTLFIIEKTYSLLLDVEDYERRYLLSLEEERPAL
MDERKHKICCMYDNLRGKLPGQESLSDDHFVQIMCIRKGKRMVARVLPFLSTEQAADILM
TTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPPVTVTSLLQQLMNLPQSAAAPAPSNP
HLSAVLQNKFGLSLLLLVLSRGEDLQSSDTASESAQSNPWTEVMFVATRELLRIPQTGLA
KPVSIPTNLASLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaaatcgggggatagaaaaaatgccatctgtacagagagttataatgaagct
attgtgttgattggtaagtctttggaggattgtcctctggacgaagatgaagatgcattt
cagggcctgggagaggaggatgaagagattgatcaattcaatgatgatacatttgggtca
ggtgcagttgatgatgattggcaggaagctcatgagcgcctggctgaactggaagagaag
ccgcctgcagcagttaatgaacaaaccggcaatggagaacgggatgagatggacttgttg
ggtgaccatgaggagaatctggcagagaggctcagtaagatggtgattgaaaatgaactt
gaagacccagctatcatgagggcggtacagaccaggccagtgttggaaccccaaccagga
agtctcaattccagcatctgggatggatctgaagttctgaggcgaatccgaggaccactg
cttgctcaggaaatgcctacagtgtctgtgttagaatatgccttgcctcagaggcccccc
cagggcccagaagacgatcgggacctttccgagcgcgcgttaccaaggcggtccacctcg
cctgtcattgggagtcctcctgttagagctgtccccataggcaccccacctaagcagatg
gctgtgcccagcttcaaccagcagcctgtgcagtcctgttccatagacttccctccacct
gaaaccagcagctggaaaggaaggccaatgtggaagatcctgtgtccaaagcctgtgcat
gttcggcccccgatgccgccgcggtatcctgctccctatggtgagagggtgtctccaaac
cagctctgcagtgtcccgaactcctccctgctgggccacccttttccccctagcgtccct
cctgtcctcagccccctccagagagcacagcttcttggaggagcgcagctacagcctgga
cggatgtctcccagccagtttgcacgggtccctggattcgtgggcagcccacttgccgcc
atgaatcccaagctgttgcaagggcgagttgggcagatgctcccccctgcgccaggcttc
cgcgccttcttcagtgccccaccccctgctacaccaccacctccacagcagcacccccct
ggcccaggaccccacctgcagaatctaagatcgcagaccccagtgtttagaccagacaca
acccatcttcatccacagcaccgtcgactcttgcatcagaggcagcaacagaatagaaat
cagcatcggactctcaacggtgcaggagacagagggagtcaccggagcagtcatcaggat
catatccggaaggacccgtatgctaacctcatgctgcagcgagagaaagactgggtctct
aagattcagatgatgcagctgcagagcactgacccctacctggacgacttctactaccag
aattactttgaaaaactggagaagctgtcagctgctgaagaagtgcacggtgatggccca
agaaaggaacgcaccaagctcatcacgccccaggtggccaggctggagcacacctacaag
ccagtgcagtttgagggctctttgggaaagctcactgtctctagtgtgaataatccccga
aaaatgattgatgctgttgtgacgtctcggagtgaggatgatgagacaaaagaaaaacag
gttcgggacaaaagacgaaaaacccttttcataattgagaaaacctacagtttactgctt
gatgtggaggattacgaaaggcgttacctcctaagtctggaagaagagcgacctgccctg
atggatgaaagaaagcacaaaatttgttgcatgtacgacaacttaagggggaaattgcct
ggacaggagagcctgagtgacgaccactttgtgcagatcatgtgcatccgaaaggggaag
aggatggtggcccgggtcctgcctttcctctccacagagcaagcagcggacattctcatg
acaacagccaggaacctgcctttcctcatcaagaaggatgcgcaggatgaggtgctgccg
tgcctattgagtcccttctctctcctcctctaccatcttccaccagtgaccgtcaccagc
cttctgcagcagctgatgaacctacctcagagtgcagcggccccagctccgtccaacccg
cacctctctgccgtgctccagaacaagtttggcctgtccctgctcctcctcgtcctgagc
cgcggggaagacctacagagctcagacaccgcttcagaatcggcgcaaagcaacccgtgg
acggaggtgatgttcgtggcaacccgagaacttttgcggattccccagacgggcctggcc
aagccagtctctatacccacaaacctagcatccctcttctctcgctacgttgaccgacag
aaactgaacttgctggagacaaagctgcagctagttcaggggatacggtaa
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