Oceanobacillus sp. 143: CV093_00625
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Entry
CV093_00625 CDS
T06339
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ocb
Oceanobacillus sp. 143
Pathway
ocb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ocb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CV093_00625 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocb03021
]
CV093_00625 (rpoC)
03400 DNA repair and recombination proteins [BR:
ocb03400
]
CV093_00625 (rpoC)
Enzymes [BR:
ocb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CV093_00625 (rpoC)
Transcription machinery [BR:
ocb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CV093_00625 (rpoC)
DNA repair and recombination proteins [BR:
ocb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CV093_00625 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QGS67793
LinkDB
All DBs
Position
121559..125164
Genome browser
AA seq
1201 aa
AA seq
DB search
MLDVNTFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEEVIYFAAYIVTDSGNTPLEKKQLLSEKEYRSYYDKYGNSFKAQMGAEAIRKLLQ
DIDLEKEVDALREELKTASGQRRTRAIKRLEVLEAFRHSGNDTSWMVLDVIPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIIVGPNLKMYQCGLPRE
MALELFKPFIMKELVERGLAHNIKSAKRKIERVHPDVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGSVFKDINEAMLAYHNGYVHLHTRIAVL
ASSVNNKTFTEKQQNMMLLTTVGKLIFNEILPESFPYINEPTKVNLQEETPANYFVEVGV
DLQKEIENRDEVKPFKKGFLGDIIAEVFKQYKITETSKMLDRMKDLGFSYSTKAGMTVGI
SDIVVLPDKQEILDEAQIKVDNVLKQFRRGLITEEERYDRVISIWSQAKDVIQGKLMDSL
SNRNPIFMMSDSGARGNASNFTQLAGMRGLMADPSGKIIEIPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGLTVSALVDGTEVIEPLI
DRLIGRNAFTPVKHPETGKVLVKRNELILEDKAKAIINAGVEEVTIRSAFTCNTKHGVCQ
KCYGRNLATGADVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARIPKGQAVITEIAGTVLEMKEVKDKQEIVIQGEVEQRSYPVPYNARMKVAIGDEVFAG
QELTEGSIDPKDLLRIQGVEGVQAYLLREVQRVYRMQGVEIGDKHVEVMVRQMLRKIRVS
ESGDTNLLPGSLLELHQFRDANHAVLIDGEQPATGKPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPQYRNIKGVLDKPVIEQTEEIETV
Q
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaatacatttgagtatatgaaaataggtttggcttcaccagagaagatt
cgctcctggtcatatggcgaggttaaaaaaccagaaacaattaattatcgtacgttaaag
cctgagaaagatggtttgttctgtgaacgtatatttgggccaactaaagactgggaatgc
cattgtggaaaatacaaacgtgttcggtacaaaggtgttgtttgtgatcgctgtggtgta
gaagttactaaatcgaaagtgcgccgtgaacgtatgggccacatcgaattagccgcgcct
gtatcgcatatttggtatttcaaaggaattccaagcagaatgggtcttattttagacatg
tctccaagagcgttagaagaagttatctacttcgctgcatatattgtgactgattctgga
aatacacctttagaaaagaaacaattattgtctgagaaggaatatcgttcatattatgat
aagtatggtaattcttttaaagcacaaatgggtgcggaagcaattcgcaagctacttcaa
gatattgaccttgaaaaagaagttgacgcattaagagaagaactaaagactgcaagtggt
caaagaagaacaagagcaattaaaagattagaagtattggaagcgttccgtcattctgga
aatgatacgagctggatggttcttgatgttattccagtaatcccgccagaaataagacca
atggttcaacttgatggtggacgttttgctacttctgatttaaatgatttatatcgtcga
gtaattaacagaaataaccgtctaaaacggctgttggaccttggtgcacctagtatcatc
gtacaaaatgagaaacgtatgcttcaagaagcagttgatgctttaattgataatggtcgt
agaggccgtccggtaacaggaccaggtaatagacctctgaaatctttatcacacatgcta
aaagggaagcaaggtcgtttccgtcaaaacttacttggaaaacgtgttgactactctggc
cgttctgtaattatcgttggtcctaacttaaagatgtaccaatgcggactgccgagagaa
atggcattagagctatttaaaccatttattatgaaggagcttgtcgaaagaggacttgcg
cataatattaagtcagcgaaacgtaaaattgagcgtgtacaccctgatgtttgggatgtg
ctggaagatgttattaaggaacatccagtactcttaaaccgcgcacctacattgcataga
ctaggtattcaagcatttgagcctacattagtagaaggacgcgcaattcgtttgcatccc
ttagtatgtactgcatataatgccgactttgatggtgaccaaatggctgttcacgttcca
ctaagtgcagaagcacaagcagaagcacgtatcctaatgcttgctgcgcaaaacatctta
aatccaaaagatggtaaaccggttgttacaccatcacaggatatggtattaggaaactac
tacttgacgttggagcgcgctggagcggtcggagaaggtagtgtatttaaagatattaat
gaagcgatgttagcttatcataatggatatgttcatttacacacacggatagcagtgctt
gcatctagcgtaaataacaaaacatttacagaaaagcaacaaaatatgatgcttctaacg
actgttggtaagttaatctttaacgagatattaccggagtcattcccatatattaacgaa
cctacaaaagtaaacttgcaagaagaaacaccagcaaattactttgtggaagttggagta
gatcttcagaaggagatcgaaaatcgcgatgaagttaagccatttaagaaaggtttctta
ggtgatattattgctgaagtattcaagcagtataagattacagaaacatcgaaaatgctt
gaccgtatgaaagatttaggatttagttattctacgaaagctggtatgacagttggtata
tctgatatcgttgttttacctgataaacaagaaattcttgatgaagcacaaatcaaagta
gataacgtccttaaacaattccgtcgtggattgattactgaagaagaacgctatgaccga
gtaatttcgatttggtcacaagcaaaagacgttattcaaggtaagttaatggattcattg
agtaaccgaaatccaattttcatgatgagtgattccggtgcccgtggtaacgcatctaac
ttcacgcagcttgcaggtatgcgtggtttaatggcggatccatctggtaaaatcattgaa
atcccaatcaaatcaagtttccgtgaaggtttaacagtgctagaatactttatttctaca
cacggtgctcgtaaaggtcttgcggatacagcacttaagactgctgactctggttactta
acaagaaggcttgtagatgttgcacaagatgtaatcatccgtgaagaagattgtggtaca
gatcgtggcttaactgtttctgctttagtagatggaacagaagtgattgaaccattaatc
gatcgtctaatcggacgtaatgcattcacacctgtgaagcatcctgaaacaggtaaagta
cttgtgaaacgaaatgaattaattctagaagacaaagcgaaggcgattattaatgcagga
gttgaagaggtaacaattcgctctgcatttacatgtaacaccaaacacggcgtctgccaa
aaatgttatggtcgtaaccttgcaactggtgctgatgttgaggttggagaagcagttggt
attattgctgcccaatctatcggtgagccaggtacacagttaacaatgcgtaccttccat
acaggtggggttgctggagacgatattacccaaggtttaccacgtattcaagaactattt
gaagcgcgtattccgaaaggtcaggcagtaattacagaaatcgcaggtactgtcctagaa
atgaaagaagtgaaggataaacaagaaattgttatccaaggtgaagttgagcaacgttct
taccctgttccgtacaacgcgagaatgaaagtcgctatcggtgacgaagtattcgctggt
caggagttaacggaaggttcaattgatccgaaagacttgctgcgcatccaaggtgttgaa
ggtgttcaagcttacctattacgcgaagtacaacgcgtatatcgtatgcaaggggtagaa
attggcgataaacacgtagaagtaatggttcgccaaatgctacgtaaaatccgtgtaagt
gaatctggagatacgaacttacttcctggttcactacttgaattacatcaatttagagat
gcgaaccatgctgtcttaattgatggtgaacagccagcaacagggaaacctgttttacta
gggattacgaaagcttccttggaaacagattcattcctatcagcagcatcattccaagaa
acaactcgtgtcttaacagatgcagcaattaaaggaaaacgcgatgagttacttggatta
aaagaaaatgttattatcggaaaactcgttccagctggtacgggaatgccacagtatcgt
aacattaaaggtgtacttgataaacctgtaattgaacaaacagaagagatcgaaacggtt
caatag
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