Oceanobacillus sp. 143: CV093_02255
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Entry
CV093_02255 CDS
T06339
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ocb
Oceanobacillus sp. 143
Pathway
ocb03420
Nucleotide excision repair
ocb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CV093_02255
03430 Mismatch repair
CV093_02255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocb03400
]
CV093_02255
Enzymes [BR:
ocb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CV093_02255
DNA repair and recombination proteins [BR:
ocb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CV093_02255
MMR (mismatch excision repair)
Other MMR factors
CV093_02255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
UvrD_C
AAA_19
Viral_helicase1
AAA_30
DEAD
GvpD_P-loop
NACHT
Kei1
Motif
Other DBs
NCBI-ProteinID:
QGS67949
LinkDB
All DBs
Position
425576..427870
Genome browser
AA seq
764 aa
AA seq
DB search
MSNEMENRMEEQLRVDAVIDEINIKEKKLSSQITGLKENVVELRKNFWEDITVNIDEPDD
IIETQESIKQQAALLSEKERYHGKIGEELKTLDKLKSSPYFGRIDFIEESELERDQIYIG
ISSLMDQGEEDFLIYDWRAPISSLYYDFSPGKAHYETIEGPINGEITLKRQFIIRQGKIQ
GMFDTGVTIGDHLLQQALGNNASTTMKSIVATIQKEQNKIIRNEKSNLLIVQGVAGSGKT
SAALQRIAYLLYRYRGELNADNVVLFSPNPLFSSYIANVLPELGESNVKQITFLDFLKVG
IGRKLAVESPFEQMEYVLAEMKENHYVTRMNSMDYKSSLNFKQMIDQFISYLNDEAIQFR
NITFRGSMLISKGKISDYFYSLDKEISIANKMELVSKWLLKELRQIQRSEKDKDWVIEEA
ELFNKEDYVKAYQQNEDQNAEDEEEILRREVVRRAFATMKRRIKRMEFVHILATYKKLFA
EWNPPVAPEGWEEISEQTATNLSRQFLTWEDATPYLYFKEKLLGNVHDRSVRQLIIDEAQ
DYSAFQFAYIKEIFPYTRMTLLGDINQAIYSHISKDNPLVPDSGQGSMERITLTKSYRST
RQIVEFTKYFAPGGNLIEPFNRDGSKPLLTKISEQVDLGEKLKININEFKEKGYETIAVI
CKTLKESEEIVNILQDKMRVIQITEETYAFEKGVLVLPVYLAKGIEFDAVIIPDASEERY
SQESDRTLFYTACTRAMHELSILSLNEPCRFIKAVPKDKYDVAK
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatgaaatggaaaaccgcatggaggaacagcttcgagtagacgcggttatcgat
gaaatcaacatcaaagagaagaaactatcttcgcaaataactgggctgaaggagaatgta
gttgaactccgaaagaatttctgggaggatatcacggtaaatattgatgaacctgatgat
atcattgaaacgcaggagagtattaaacagcaagcagcgttactttctgaaaaagaaaga
tatcatgggaagattggcgaagaattaaaaactttggataagctgaaaagctctccatat
tttgggagaattgattttatagaggaatcggagcttgaaagagaccaaatctatattggg
atttcttcattgatggatcaaggagaagaggattttcttatctatgattggcgtgcacca
atttctagtctgtattatgatttttctcctggtaaggctcattatgaaacaattgaaggt
ccgataaatggtgaaataactctaaaaagacagtttataattaggcaaggcaaaatccag
ggaatgttcgatactggagttaccattggagaccatcttcttcagcaggcgcttggaaat
aatgcgagcacaacaatgaagagtattgttgcaacaattcagaaggagcagaataagatt
attcgtaatgagaaaagtaatttattaattgtgcaaggtgtagcaggaagtggcaagaca
tccgcagccctccaacgtattgcttacttattgtatcgctatcgcggagagttaaatgca
gataatgttgtgctcttttcaccaaatccgttattttcaagttatattgccaacgtgctt
ccggaattaggcgagtccaatgtgaagcaaataacctttttggacttcttaaaggtaggg
attggcagaaagctagcggttgagtctccgtttgagcagatggaatatgtactggcagag
atgaaggaaaatcattatgttactagaatgaatagcatggactacaaatcaagtttgaat
tttaaacagatgatcgatcaatttatttcttatctaaatgatgaggcaattcaattcagg
aatattacattccgtggaagcatgcttatttctaaagggaaaattagcgactatttttat
tcattagataaagaaattagtatagcaaataaaatggagctcgtgtcgaaatggcttctg
aaagaactgcggcaaattcaacgttcagaaaaagataaggactgggtaattgaagaagca
gagctgttcaataaagaggattatgtgaaagcttatcaacagaatgaggatcaaaatgct
gaggatgaagaggaaatattacgtagagaagtggtaagacgagcctttgcaaccatgaaa
agacgcataaagcgaatggaatttgttcatatacttgcgacctacaagaagttatttgct
gagtggaatccacctgttgctccagagggatgggaggaaataagcgagcaaacagcaact
aatttatcgcgtcagtttttaacatgggaggatgcgacaccgtatttatattttaaagag
aagctgcttggaaatgtgcatgaccgttctgtacgtcaattgattatcgatgaggcacag
gattactctgcattccaatttgcttacataaaggagattttcccatacacaagaatgacg
ttactcggtgacattaatcaggcaatctattcacatatatcgaaggacaatcctcttgtt
ccagattcggggcaaggaagtatggagagaatcacattaacgaaaagctatcgatcgaca
agacaaattgttgagttcacaaagtattttgctccaggagggaacttgattgagccattt
aatcgagatgggagtaaaccactattaaccaaaattagtgagcaagtcgatctgggggaa
aagctgaaaataaatattaatgaatttaaggaaaaaggctatgaaaccatcgcagttatt
tgtaagacattaaaagaaagtgaagaaatcgttaatatactgcaggataaaatgagagta
atacagataacagaggaaacatatgctttcgaaaagggagtattggtattgcctgtttat
ttggcaaaggggattgaatttgatgcagtaattattcctgatgcatctgaggagcgctat
agccaagagtcagaccgcacgcttttctatactgcatgtacgagggcgatgcacgagctt
tctatattaagtttaaatgagccatgtcgatttattaaagccgttccgaaagataaatat
gatgtagcaaaatag
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