Ochrobactrum sp. BTU1: KMS41_00620
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Entry
KMS41_00620 CDS
T09943
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
occ
Ochrobactrum sp. BTU1
Pathway
occ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
occ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KMS41_00620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
occ03019
]
KMS41_00620
03009 Ribosome biogenesis [BR:
occ03009
]
KMS41_00620
Enzymes [BR:
occ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KMS41_00620
Messenger RNA biogenesis [BR:
occ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KMS41_00620
Ribosome biogenesis [BR:
occ03009
]
Prokaryotic type
rRNA helicases
KMS41_00620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QWK77786
LinkDB
All DBs
Position
1:139547..141457
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AA seq
636 aa
AA seq
DB search
MSLPDTIAPALSGALAARGYTTLTAVQEAVLAPETLDADLLVSAQTGSGKTVAFGLAMAN
TLLEGELRFSRPEAPLAMIIAPTRELALQVRRELEWLYADTGATIASCVGGMDIRSERRV
LERGSHIVVGTPGRLRDHITRNALDMSQLRVVVLDEADEMLDMGFREDLEFILGEAPEDR
RTLMFSATVPKPIAQLAKRFQNDALRLTVQSETSQHADIDYVAMPVPPHERDHAIINALL
YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA
TDVAARGIDLPNLDLVIHADLPNNPETMLHRSGRTGRAGRKGTCVLVVPFSRRRTAERLL
HMAKLDAQTISAPSIAAVQAKTNERILNADVFSQPVEEEYQDLLKALTERYTPEQIAAAF
LNREVASYPAAEEVSDAPVHPVGGKKPRERSDRGDRGDRFERSDRRERGEPGERFDRNSS
FDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEITAAKADEFRR
SVEERGTGEKGLVIRNAVAGAGGDASPREGKGNFKPRGDKFKSDFRDGPRDGNRDNARDG
AKGSWSKPKGDFKKDGFKKDGKKFGDGGFSKKRRGE
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgcctgatacaatcgctccggctctttccggagcattagccgctcgtggttac
actacactcactgctgttcaggaagccgttctggctccagaaacgctggatgcagatctt
ctcgtttccgcacagaccggatcgggcaagacggtagcgtttggccttgctatggccaat
acgcttctcgaaggtgaactgcgctttagccgtccagaagcacctcttgccatgattatt
gcacctacgcgtgaactggcattgcaggttcgtcgcgaactggaatggctttatgcagac
accggcgcaaccatcgcatcctgcgttggtggcatggatatccgttccgaacgccgtgtg
cttgaacgcggatcgcacatcgttgtcggcaccccaggtcgccttcgcgaccatatcact
cgcaatgcgcttgatatgtcgcaactgcgcgtcgtcgtgctcgatgaagctgacgaaatg
ctcgacatgggtttccgtgaagaccttgaatttattctcggtgaagcaccggaagatcgt
cgtacattgatgttctcggcaacggtgcctaagccaattgcccagcttgccaagcgcttc
cagaatgacgctctgcgtctgactgttcagagcgaaaccagccagcacgctgacatcgac
tatgtcgctatgccggtgccgccacatgagcgcgaccacgcgatcatcaacgcgctactc
tattacgattcacagaattcgatcatcttctgctcgacccgcgaagcggtaaagcacatg
gcaagccgcctttccaatcgcggttttgcggttgtggcgctgtcgggtgaactgagccag
gcagaacgcaacaatgcattgcaggcaatgcgtgatggccgtgcccgtgtttgcgttgct
accgacgttgctgcacgcggtattgatctgccgaaccttgatctggttatccatgccgat
cttccgaataacccggaaaccatgctgcaccgttcgggccgtaccggtcgtgcaggccgt
aagggcacctgtgttctggttgttccgttctcgcgtcgccgcactgcagaacgtcttctg
catatggccaagcttgatgcgcagaccatttctgcaccaagcatcgctgcggttcaggcg
aagaccaatgaacgcattttgaatgcagacgttttcagccagccggttgaagaagaatat
caggatctgctgaaagcgctcaccgagcgttacacgccggaacagatcgcagctgcgttc
ttgaaccgcgaagtcgcttcctatccggcagcagaagaagtttccgatgcacctgtgcat
ccggttggcggcaagaagccacgcgaacgttctgatcgtggtgatcgtggcgaccgcttt
gaacgcagtgatcgccgtgaacgtggcgaaccaggtgaacgctttgaccgtaattcgtcg
tttgatggcgtgtggttctccgtttccgccggtcgcaagcatcgcgccgatccaaaatgg
cttctgccgctcatctgcaaggcaggtgacgtatcgaagcgtgatgtcggttcgatcaag
attttcgacaacgaaacccgtttcgaaatcacagcagccaaggctgatgagttccgccgc
tcggtcgaagaacgcggcactggcgaaaagggtcttgtgatccgtaacgctgttgcaggc
gctggtggcgatgcttctccacgcgaaggcaagggcaacttcaagccacgcggcgacaag
ttcaagagcgatttccgtgatggcccgcgcgatggcaaccgtgataatgcccgtgacggc
gcaaagggcagctggtcgaagccgaagggcgacttcaagaaagatggtttcaagaaggac
ggcaagaagtttggtgacggcggcttcagcaagaaacgtcgcggcgaataa
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