Ochrobactrum sp. BTU1: KMS41_03960
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Entry
KMS41_03960 CDS
T09943
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
occ
Ochrobactrum sp. BTU1
Pathway
occ03030
DNA replication
occ03430
Mismatch repair
occ03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
occ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KMS41_03960 (dnaE)
03430 Mismatch repair
KMS41_03960 (dnaE)
03440 Homologous recombination
KMS41_03960 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
occ03032
]
KMS41_03960 (dnaE)
03400 DNA repair and recombination proteins [BR:
occ03400
]
KMS41_03960 (dnaE)
Enzymes [BR:
occ01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KMS41_03960 (dnaE)
DNA replication proteins [BR:
occ03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KMS41_03960 (dnaE)
DNA repair and recombination proteins [BR:
occ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KMS41_03960 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
McdB_C
DUF655
Motif
Other DBs
NCBI-ProteinID:
QWK78405
LinkDB
All DBs
Position
1:822417..825905
Genome browser
AA seq
1162 aa
AA seq
DB search
MNDKASILAGGGKSSPRFVHLRVHSAYSLLEGALPVGKIIKQAIADQAPAIAITDSNNLF
GALEFAQKASKDGLQPIIGCQLDVAFGDHNDNSRSANRRLVLDLAPLVFLASTEEGYANV
VRLVSRAFLDTQSGDPVHVDASWLSDLSEDVIVLSGGPLGPIGRAFAADRPDRAETRLAF
LKEAFGDRLYVELQRQAGYDRALEAKTVELAYAMELPLVATNEAFFLKAEDFEAHDALLA
IAEGQILSNDDRRRLTPDHHLKSRSEMAALFADLPEALENTIEIAERCSWFTQTRQPILP
RFTGESDDPEAAIQAEADELARQAREGLQMRLETAGLAEGYTEEQYAERLDYEIGIITRM
KFPGYFLIVADFIKWAKQQGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPD
RVSMPDFDIDFCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQ
VDRLCKLVPQNPANPVSLAQAIETEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAA
GIVIGDRPLSELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLETAVKLVA
RKGIDIDLSRLPLDDELTYEMLSRGETVGVFQVESAGMRKALLGMRPDRIEDIIALVALY
RPGPMENIPTYNARKNGEEEIASIHPKIDDLIKETQGVIVYQEQVMQIAQVLSGYSLGEA
DLLRRAMGKKIREEMDKQRVRFVDGAIEGGVDKAQANMIFDLLAKFADYGFNKSHAAAYA
IVSYQTAYMKAHYPVEFLAASMTYDMSNADKLNDFRRDANRLAIDVVTPSVMTSFRPFEV
GEKKIFYSLAAIKGVGEAAVDHIVSVRSEKPFESLEDFCERIDPKIVNRRVTESLINAGA
LDCFGRDRAAMSAGMDRIMGFAQRTQENAASGQSDIFGLSGAPKETLILPQAAPWLPSEK
LHREFQAVGFYLSAHPLDEYRQVLDRMRVQSWADFSAAVKRGANAGRLAGTVTTRQERKT
RTGNKMGIVQLSDATGQFEAVLFSEGLAQYRDLLESGKSVVITVAAENRPEGIGLRIQTV
QSLEDEACRMQKALRLYLRSAEAVKHIVPHFNTRGDGQVSLIVIKEEGQREVEIELPHRY
RVSPQIASAMKAIPGVVEVELV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaatgataaagcaagcattttagcgggcgggggcaagtcgtcacctcgtttcgttcat
ctgcgagttcattctgcttactccttgttggaaggcgcgctgcctgtcggcaagatcatc
aaacaggcgattgccgatcaagcaccggccatcgcgataactgacagcaacaaccttttc
ggcgctctcgagtttgcacaaaaggcgtcaaaggatggtttgcagccaatcataggctgc
cagctggatgttgcttttggcgatcacaacgataacagccgcagtgcaaaccgacgattg
gttctcgatcttgcacctctggttttcctcgcttcgactgaggaaggttatgcgaacgtt
gtcaggcttgtcagccgagcgtttcttgatacgcaatcgggagacccagtgcatgtcgat
gcaagctggttatctgatctgtcagaagacgtgattgttctttcaggcggccctttgggg
ccaatcggacgcgcatttgctgctgatcgtcccgatcgcgctgaaacccgtttggccttt
ttgaaagaagcattcggtgatcggctttatgtcgagttgcagcggcaggcgggctatgat
cgcgcgcttgaggcaaagaccgtcgagttagcatatgcgatggaactgccgctcgtcgcg
accaatgaagctttctttttgaaagccgaggattttgaagcgcacgacgcgcttcttgcc
atcgctgaaggtcaaattctatccaatgatgatcgccgtcgcttgacgccggatcatcat
ttgaaaagccgttcggaaatggctgccctgtttgcagacctgcccgaagcgctcgaaaac
acgattgaaatcgccgagcggtgcagctggttcacgcagacacgtcagccgatcctaccg
cgtttcaccggcgagtctgacgatcctgaagcagccattcaggcggaagctgacgagctg
gcacgtcaggcgcgtgaaggcctgcagatgcggttggaaacagcaggtcttgctgaaggc
tatacagaagaacaatatgccgaacgtctcgattacgagatcggcattattacccgcatg
aaattcccgggttacttcctgatcgttgcggactttatcaaatgggccaaacaacagggt
attcctgtaggaccggggcgtggttctggtgcgggttcgctcgtcgcttatgctttgacg
attacagacgttgatccgctgcgcttctcgcttctgttcgaacgcttcctcaatccagat
cgcgtatcgatgcccgacttcgatatcgacttctgtcaggatcgtcgcgaagaagttatt
cgctacgttcaggagaaatacgggcgcgatcaggtcgcgcagatcatcaccttcggtact
ttgcaggcgcgtgctgtgctacgcgacgtgggccgtgttctcgaaatgccatacggtcag
gttgatcgtctctgtaagcttgtaccgcagaacccggccaatccggtgtctctggcacaa
gccatcgagactgagccaaagatcaatgaagagcgcgagaaggagcccgttgttggccgt
cttcttgatatggcgctgaagcttgaaggactgtatcgtcacgcctcgacccacgccgcc
ggtatcgtcatcggcgatcgtccgctttctgaactcgtgccgatgtatcgcgatccacgt
tccgatatgccggtcactcagttcaatatgaaatgggtcgagcaagccgggttggtcaag
ttcgactttctgggtctgaaaacactgacggttctcgaaacagccgtgaagctcgttgca
cgcaagggcatcgatatagacctgtcgcgcctgccgctcgatgatgaactcacctatgaa
atgctgtcgcgcggcgaaacggtcggcgtgttccaggtggaaagtgccggtatgcgtaag
gcgttgcttggtatgcgtcccgaccggatcgaggatattattgcgcttgttgcgctttat
cgccctggtccgatggaaaacatcccgacctataatgcgcgcaagaacggtgaggaggaa
atcgcctccattcatccaaaaatcgacgatctgatcaaggaaacgcagggcgttatcgtt
tatcaggaacaggtgatgcagatcgcacaggtgctttccggctattcgctcggtgaagct
gatcttctgcgccgcgcgatgggtaaaaaaatccgcgaagaaatggacaagcagcgtgtc
cgttttgttgatggtgcgatcgaaggtggtgttgataaggctcaggcgaatatgattttc
gacctgttggctaagttcgctgactacggcttcaacaagtcgcacgctgctgcctatgcg
attgtctcctaccaaactgcctatatgaaggcgcattatccagttgagtttctagcggca
tcgatgacctatgatatgtcgaacgcagataagctcaatgatttccgtcgtgatgcaaat
cgtttggcaatcgatgttgtgacaccttccgtcatgacatcgttccgtcctttcgaggtg
ggcgagaagaagattttctattctttggcagcaatcaagggcgtgggcgaagctgccgtt
gatcatatcgtcagtgtgcggtccgaaaagccgtttgaaagccttgaggatttctgtgag
cggatcgatccgaaaatcgtcaatcgccgcgtaacggaaagcctgatcaatgcaggcgca
cttgattgctttggtcgcgaccgtgctgcaatgagcgcgggtatggaccgcattatgggc
ttcgcgcagcgcacgcaggaaaatgcggccagcggccagtccgatatttttgggctttca
ggtgctccgaaagaaacactgattcttccgcaggcagcgccatggctcccttcggaaaag
ttgcatcgcgagtttcaggcagttggcttttatttgtccgcccatccgctcgatgaatat
cgtcaggtccttgaccggatgcgtgtgcagagctgggccgatttctcggcggcggtgaag
cgtggtgcaaatgcaggtcgtcttgccggaacagtaaccaccagacaggagcgtaagacg
cgcacaggcaacaaaatgggcattgtgcagctgtcggatgccaccggccagtttgaagcc
gtacttttctcggaaggtctcgcgcagtaccgcgacctgcttgaaagcggtaaatcggtg
gtgatcacagttgccgcggaaaaccgtccagaagggattggcctcagaattcagacggtg
cagtcgctcgaggacgaagcctgccggatgcagaaggcactccggctctatcttcgttca
gcggaagcggtgaagcatattgttccgcatttcaacacgcgtggcgacggtcaggtgagc
ctgattgtcattaaggaagaaggtcagcgcgaagtcgagattgagcttccccaccgctat
cgcgtcagtccgcaaattgcgagcgcgatgaaggcaattccaggtgtcgttgaagttgaa
ctggtctaa
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integrated database retrieval system
