Ochrobactrum sp. BTU1: KMS41_06050
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Entry
KMS41_06050 CDS
T09943
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
occ
Ochrobactrum sp. BTU1
Pathway
occ03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
occ00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KMS41_06050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
occ03021
]
KMS41_06050
03400 DNA repair and recombination proteins [BR:
occ03400
]
KMS41_06050
Enzymes [BR:
occ01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KMS41_06050
Transcription machinery [BR:
occ03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KMS41_06050
DNA repair and recombination proteins [BR:
occ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KMS41_06050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Fpg-like_C
HHH_XRCC3_RpoA
IDH
Motif
Other DBs
NCBI-ProteinID:
QWK76697
LinkDB
All DBs
Position
1:complement(1253370..1254383)
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AA seq
337 aa
AA seq
DB search
MIQKNWQELIKPNKVDFITNGSRTHATVVAEPLERGFGLTLGNALRRVLLSSLRGAAVTA
IQIDGVLHEFSSIPGVREDTTDIVLNVKEIAIRMEGEGPKRMVVRKEGPGVVTAGDIQTV
GDVEILNPDHVICTLDEGAEIRMEFTVNTGKGYVPADRNRAEDAPIGLIPVDSLYSPIRK
VSYKIENTREGQVLDYDKLTLNIETNGSVSGEDAVAYAARILQDQLAIFVNFEEPQKEAP
QEQVAELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSL
NEIKEVLASMGLHLGMEIPAWPPENIEDLAKRYEDQY
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgatccagaagaactggcaggaactgattaagccgaacaaggtggattttatcaccaac
ggctcacgcacccatgcaaccgtcgttgctgaaccgctggaacgcggtttcggtctgacg
ctcggtaacgcactgcgtcgcgtgcttctgtcgtcgctgcgcggcgctgctgtaaccgcc
attcagatcgatggcgttctgcatgaattctcttccattccgggcgtccgcgaagacacc
acggatatcgttctgaacgtcaaggaaatcgctatccgtatggaaggcgaaggcccgaag
cgcatggttgtccgtaaggaaggccctggcgttgttacggctggtgacattcagactgtt
ggcgatgtcgagatccttaatccggatcacgtcatctgcacgctggatgaaggcgctgaa
atccgcatggaattcaccgtcaacaccggtaagggctatgtgcctgccgaccgtaatcgt
gcggaagatgctccaatcggccttattccggttgatagcctttattcgccgatccgcaag
gtatcgtacaagatcgagaacacccgtgaaggtcaggttcttgattacgacaagctgacg
ctcaacatcgaaaccaatggttccgtgagcggtgaagatgcagttgcttatgcagctcgt
attcttcaggaccagctggcgatcttcgtcaacttcgaagagccacagaaggaagctccg
caggaacaggttgcggaactggctttcaatccggctctgctcaagaaggtggacgagctc
gaactgtcggtacgttcggcaaactgcctgaagaacgacaacatcgtctatatcggcgat
ctgatccagaagacggaagccgagatgctgcggactccgaatttcggccgcaagtcgctc
aacgagatcaaggaagttctggcgtcgatgggtctccatctcggtatggaaatcccagcc
tggccgcctgaaaacatcgaagacctcgctaagcgctacgaagaccaatattaa
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