Ochrobactrum sp. BTU1: KMS41_06210
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Entry
KMS41_06210 CDS
T09943
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
occ
Ochrobactrum sp. BTU1
Pathway
occ03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
occ00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KMS41_06210 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
occ03021
]
KMS41_06210 (rpoB)
03400 DNA repair and recombination proteins [BR:
occ03400
]
KMS41_06210 (rpoB)
Enzymes [BR:
occ01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KMS41_06210 (rpoB)
Transcription machinery [BR:
occ03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KMS41_06210 (rpoB)
DNA repair and recombination proteins [BR:
occ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KMS41_06210 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
QWK76728
LinkDB
All DBs
Position
1:complement(1276912..1281042)
Genome browser
AA seq
1376 aa
AA seq
DB search
MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPAGGRSDEGLQAVFK
SVFPIQDFSGASMLEFVRYEFDAPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF
AARVIPYRGSWLDIEFDAKDVVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYSR
DGDNWRIPYSADRFKGMKIISDLVDADTGEVVLEAGKKLTARSAKQLAEKGLKAIKATED
DLFGSYLAEDIVNYATGEIYLEAGDEIDEKVLKTLLDTGVEEINVLDIDHVNIGAYIRNT
LAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLD
LDAEDTVRVLRKEDILAVVKMLVELRDGRGEVDDIDNLGNRRVRSVGELMENQYRVGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKVVDGKVTSDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENV
DLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEAVVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQSTCINQRPLV
RVGDPIGKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSI
HIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRDIMTEYPRSQWW
QFAVEDEKQQGELEALRGQYDESKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLG
WACAGMGKKIGELIDVYRKTADIQPLRDTLEHIYPDNDRNEPVRSYDDDSVIMLANQVKR
GVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTRDEQPALPDAAE
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggctcagacccattctttcaatggtcgcaagcgcgtacgcaaatttttcggcaagatt
cccgaggtcgcggaaatgcctaacctcatcgaggttcaaaaggcatcttacgaccagttc
ctcatggttgaggaaccagctggcgggcgttctgacgagggtttgcaggcggttttcaag
tctgttttcccaattcaggatttctccggcgcttcaatgctcgaattcgttcgctacgaa
ttcgatgcaccaaaattcgacgttgacgaatgccgtcagcgcgatttgacgtattcggca
cctctcaaggtgacgctgcgtctgatcgtgttcgatattgatgaagataccggtgcgaag
tccatcaaggacattaaggagcaggacgtttacatgggcgatatgccgctcatgacggac
aacggcaccttcatcgtcaacggtacagaacgcgttatcgtttcgcagatgcaccgttcg
ccgggcgtattcttcgatcacgacaagggcaaaacccattcgtcgggtaagcttttgttc
gcagctcgcgttattccttatcgcggttcgtggcttgacatcgaattcgatgccaaggac
gtagtctatgcacgtatcgaccgtcgccgtaagcttccagctacgacgctgttgatggcg
cttggcatggacggcgaagagattctgtcgacgttctataaaactgtcacctattcgcgt
gacggtgataactggcgcattccttattcggctgaccgcttcaagggtatgaagatcatt
tctgatctcgtcgatgcggacaccggagaagtcgttctcgaagctggcaagaagttgacc
gctcgctcggcaaagcagctcgctgagaagggcctcaaggctatcaaggcgactgaagac
gatctgttcggctcgtaccttgcagaagacatcgtcaattacgctaccggcgagatttat
ctggaagctggtgacgaaatcgacgaaaaggttctcaagacgcttctcgacaccggtgtt
gaagagatcaacgttctcgatatcgaccatgtcaatatcggtgcgtatatccgcaacacg
ctcgctgtcgacaagaacgaaagtcgtcaggaagctctgttcgacatctatcgcgttatg
cgtccaggtgagccgccgacaatggactcggctgaagccatgttccattcgctgttcttc
gattcggaacgctatgacctttctgctgttggtcgcgtgaagatgaacatgcgtcttgat
ctggatgcagaagacaccgtgcgtgttctgcgcaaggaagatatccttgctgtggtcaag
atgctggttgaactgcgcgatggccgcggcgaagttgatgacatcgataacctcggtaac
cgtcgtgtgcgttcggttggcgaactgatggaaaatcagtaccgcgttggtttgctccgt
atggagcgtgcgatcaaggaacgtatgtcctcgatcgaaatcgacacggttatgccgcag
gatctgattaacgcgaagcctgcagccgcagcagtgcgcgagttcttcggttcttcgcag
ctgtcgcagtttatggatcagaccaacccgctttcggaaatcacccacaagcgccgtctt
tcggctcttggacccggtggtcttacccgtgagcgtgctggcttcgaagtccgcgacgtg
catccgacccactatggccgtatctgcccgattgaaacgccggagggcccgaatatcggt
ctgatcaattcgcttgcaacttttgcccgcgtcaacaagtacggctttattgaaagcccg
tatcgtaaggttgtcgacggcaaggtaacgagcgacgttgtttacctttcggctatggaa
gaagcgaagcactcggttgctcaggcaaacgttgagctggacgagcagggcggttttgtt
gacgaattcgtcatctgccgtcacgcaggcgaagttatgatggctccgcgtgaaaacgtg
gacctgatggacgtttcgccgaagcagctcgtttcggttgcagcagctcttattccgttc
cttgaaaacgacgatgctaaccgtgctctcatgggttcgaacatgcagcgtcaggccgtt
ccactcgttcgtgcggaagctccgttcgttggaaccggtatggaagcagttgttgcacgt
gactcaggtgctgctattgccgctcgccgtggtggtgtggttgaccaggttgacgcaacg
cgtatcgttattcgcgctactgaggacctcgatccttctaagtctggcgttgatatctat
cgtctgcagaagttccagcgctcgaaccagagcacctgtatcaaccagcgtccgcttgta
cgcgttggtgatcctatcggtaagggcgacatcattgctgatggcccatcgactgatctg
ggcgatctggctcttggtcgtaacgtgcttgtcgcgttcatgccttggaatggctataac
tacgaagattcgatccttctttccgagaagattgtttcggacgacgtcttcacctcgatc
cacattgaggaatttgaagtcgccgcccgcgacacgaagcttggacctgaggaaatcaca
cgtgatattccgaatgtgtcggaagaagcgctgaagaatctcgacgaagcaggtatcgtt
tatatcggtgctgaagtgcatcctggcgacatccttgtcggtaagatcacaccgaagggc
gaaagcccgatgacgcctgaagaaaagcttctgcgcgctatcttcggtgaaaaggcgtcc
gatgttcgtgatacctcgatgcgtatgcctccaggtacttacggtaccgttgttgaagtt
cgcgttttcaatcgccacggcgttgaaaaagacgaacgtgcaatggcgatcgaacgcgaa
gagatcgaacgtcttgccaaggaccgtgacgacgaacaggctattctcgaccgtaacgtt
tacggccgtctcgccgacatgatcgatggtaaggttgctgctgcaggccctaagggcttc
aagaagggcacgaccattactcgcgatatcatgaccgagtatccgcgttcgcagtggtgg
cagtttgctgttgaagatgaaaagcagcagggtgaactcgaagctctgcgcggccagtac
gacgaatccaagaagctgcttgaagcacgcttcatggacaaggtcgaaaaggttcagcgc
ggcgacgagatgcctccaggcgtcatgaagatggtcaaggtctttgtcgctgttaagcgc
aagatccagccgggtgataagatggctggccgtcacggcaataagggtgtggtttcccgc
attcttcctgtcgaagacatgccattcctcgaagacggtacacatgccgatatcgttctt
aacccgcttggcgtgccgagccgtatgaatgtgggccagattctggaaacacatcttggc
tgggcttgcgcaggtatgggcaagaagatcggtgagctgatcgatgtttatcgcaagacg
gcagacattcagccgctgcgtgatacgctcgagcacatctatccggacaatgaccgcaat
gagcctgttcgctcttatgacgatgattcagtcataatgctggcgaaccaggtcaagcgc
ggcgtgtctatcgcgacgccggtcttcgacggtgcggtggaagctgacatcaatgcgatg
ttgacggatgcaggtcttgcgacctcgggtcagtcgacgttgtatgatggacgtacgggt
gagccgttcgaccgtcaggtgacgatgggctacatctatatgttgaagctccaccacctg
gttgacgacaagatccatgctcgttcgatcggaccttactcgctcgtcactcagcagccg
cttggtggtaaggcgcagttcggtggtcagcgcttcggtgaaatggaggtctgggctctg
gaagcatacggtgcagcttacacgctgcaggaaatgcttacggtcaagtccgacgacgtt
gccggccgtaccaaggtctatgaagccatcgttcgtggtgacgatacgttcgaagctggt
attccagaaagcttcaacgttctggtcaaggaaatgcgttcgctcggtctcaatgttgag
ctggacgacacacgtgacgagcagccggcacttccggacgcggcggaataa
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