Ochrobactrum sp. BTU1: KMS41_06340
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Entry
KMS41_06340 CDS
T09943
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
occ
Ochrobactrum sp. BTU1
Pathway
occ03410
Base excision repair
occ03430
Mismatch repair
occ03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
occ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KMS41_06340 (recJ)
03430 Mismatch repair
KMS41_06340 (recJ)
03440 Homologous recombination
KMS41_06340 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
occ03400
]
KMS41_06340 (recJ)
DNA repair and recombination proteins [BR:
occ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KMS41_06340 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KMS41_06340 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KMS41_06340 (recJ)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
CDC45
Motif
Other DBs
NCBI-ProteinID:
QWK76750
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All DBs
Position
1:complement(1298225..1300009)
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AA seq
594 aa
AA seq
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MTTERFFLGIRKSVTGQKWMDRLGPREANTALAIAQHHGISDLVSRVLAGRGVSVEGAPE
FIDPSLRNLMPDPAMLTDMDKAANRIADAIMRRETVAIFGDYDVDGACSSALMARFLKHY
GIAHSIYIPDRIFEGYGPNPDAMRELVAKGASLIVTVDCGTNSAPSITAAKEAGADVVVI
DHHQVGGDLPDDAVAIVNPNREDDISQQEHLCAAGVVFLTLVQVTKVLRERGKGAGPDLL
SLLDLVALATVCDVVPLKGVNRAFVVKGLLVARSQSNAGLAALGRVSRIGEPLNVFHLGY
LIGPRINAGGRIGDAGLGARLLTLDDSTAADPIAAELDRLNLERQAMEAEMLIEAEAEAS
LELSGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAISFNANGIGSGSGRSISGL
DLGKLVRGAMERGLLVKGGGHAMAAGITIERGKLGALRAYLEEESADTVARLRENQSLSI
DGAVAASGATVSLYESLQKAGPFGSAHPQPVLALPHHILADVRLVGRDHVRVALRGADGK
RVNAIAFRVAEGDLGRFLFNNIGQSVHIVGNLSLNHWNGSVTPQIQILDAAVPI
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagaacgcttttttcttggtatccggaaatccgtcactggccagaagtggatg
gaccggctcgggcctcgtgaggccaatacggcgctcgcaatcgcgcagcatcatggcatt
tccgatctggtatcgcgcgtgcttgcagggcgcggggtttctgttgaaggtgcgccggag
tttatcgatccgagcttgcgcaatctgatgccagatccagcgatgctgaccgatatggat
aaagccgcaaaccgcatcgccgacgctatcatgcggcgcgagacggttgcgattttcggt
gactatgacgttgatggcgcatgttcatccgcccttatggcgcggtttctgaaacattat
ggtatcgcgcattcaatctatattccggatcgtatctttgaaggctacggcccgaacccc
gatgccatgcgtgaactggtcgcaaagggcgcctcgttaatcgtgacggttgattgcggc
accaacagcgcgccgtcgattacggctgcaaaagaagctggtgccgatgtcgtggttatc
gaccaccatcaggtgggcggtgatctaccggatgatgcggtggccatcgtcaacccgaac
cgcgaagacgatatttcacagcaggagcatctgtgcgccgcgggcgttgtttttctgacg
cttgttcaggtgacaaaagttttgcgcgaacgcgggaagggggccgggccggaccttctt
tcgctgctcgatttggtggcacttgcgacagtttgtgacgtggttccgctgaaaggtgtc
aatcgcgcttttgtcgtgaaggggctgctggttgcgcgtagccagagcaatgcgggactg
gcagcgcttggccgggtttcgcgcattggagagccgctcaatgttttccatcttggttat
ctgatcggcccgcgtatcaatgccgggggacgtattggtgatgcagggctgggcgctcgg
ttgcttacactggacgattcaaccgctgctgatccaattgccgcagaactcgaccgactc
aatctggagcgacaggctatggaagccgaaatgctgattgaggccgaagcggaagcttca
cttgagctttcaggcggtgcaggtgcatcggtgattgtgacggcaagtgatcgctggcat
ccgggtatcgtcggattgctggcatcgcggctcaaagaaaaggcgcgtcggcctgccttt
gccatttcatttaatgcgaatggcattggctcggggtcggggcgttctatttccggactt
gatcttggcaaactggttcgcggtgcgatggagcgcgggttgctggtaaagggcggtggt
cacgccatggcagctggtattaccattgagcgcggcaagcttggtgcgcttcgtgcatat
cttgaggaagaatcggctgatacggtcgcaaggcttcgtgaaaatcagagtctttcgatt
gacggggcggttgctgcttcgggcgcgactgtttcgctttatgaatcgttgcagaaagct
ggtcctttcggctcagcgcatccacagccggtgcttgcacttccgcatcatatattggcg
gatgtgcgtttagttggacgggatcatgtgcgtgttgctctgcgtggcgcagatggcaaa
cgcgtcaacgcgatcgccttccgcgttgctgaaggcgatctggggcggtttttgtttaat
aatatcggtcagagtgtccatattgttgggaatctttcgctcaatcactggaacggttca
gtcactcctcagatacagattctggatgcagctgtgcctatttga
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