Ochrobactrum sp. BTU1: KMS41_13970
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Entry
KMS41_13970 CDS
T09943
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
occ
Ochrobactrum sp. BTU1
Pathway
occ03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
occ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KMS41_13970 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
occ03400
]
KMS41_13970 (mfd)
Enzymes [BR:
occ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KMS41_13970 (mfd)
DNA repair and recombination proteins [BR:
occ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KMS41_13970 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
Cas3-like_C_2
MFD_D3
UB2H
AAA_22
RecG_dom3_C
NitrOD2
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QWK80015
LinkDB
All DBs
Position
2:577996..581511
Genome browser
AA seq
1171 aa
AA seq
DB search
MPVFSKFGLKAGPSAKNGKHIVIDGVADGFEAFCLARLVEEIGERGPVLYIVRDGQRIAD
LEQVLNFVSPDLPVLHLPAWDCLPYDRVSPGADASARRLAALAALASLKKSPHPAVIITT
ANAVLQKLPPQAAIAEQVISARPGNQLNMNDLSARLERNGFERVSTVRDIGEYAVRGGIL
DLYAPGSEEPLRLDFFGDTLETIRAFDPASQRTTGARKEFVLQPMSEISLSPDMISRFRK
NYVAMFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDNLETVFDYAGDMPVVFDHLVHEA
LTERHTMVVDHFESRLRQSEGKEPGTDAVPYKPVKPETLYLTPRQVEAIAETSGLRIDLT
PFGTPEVSGRSVVHAEVHKGRSFAEERAATDVNLFEAAVKYIADLRVAGKKVLVAAWSEG
SLDRLLQVLDEHGLEKIETVDRLSTVKALSRDKITAAVLAVESGFDAGDLVVVAEQDILG
DRLIRRSKRRKRDQDFISEAASLSAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYA
GDDRLFLPVENIELLSRFGSEGSEAILDKLGGGAWQMRKAKLKKRLLEIAGHLIQIAAER
QMRGAPVMQPPEGLYAEFAARFPYDETEDQLRAIDAITDDLGAGKPMDRLICGDVGFGKT
EVALRAAFVAALSGFQVAVVVPTTLLSRQHFKTFSTRFHGLPVNVAHASRLVGTKELAAT
KKGLEDGTVDIVVGTHALLGNSIKIRNLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLS
ATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLLRERYRGGQSFYV
CPRIADLTEIEEFLKDHVPELKVAVAHGQMAPGLLDDIMNAFYDGQYDVLLSTTIVESGL
DIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGRTLTQTAERRLKVLQS
LDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVATLKGTIEVEDS
QWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQEIDAFGAELIDRFGPMPEEVQ
HLLKIVYIKALCRRANVEKLDAGPKGVVIQFRNATFNNPVGLVKMIGEQGSMAKIRPDQS
IVFIRDWATPEKRLNGSAVIMTQLAKISTGS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtattcagtaaatttggtcttaaagccggcccgagcgctaaaaatggcaagcat
attgttatcgacggcgtagccgacggtttcgaagccttttgtcttgcgcggctggtcgaa
gagatcggagaacgcgggcctgttttgtatattgtacgcgatggacagcgcatcgctgat
ctggaacaggtgctgaactttgtttcacctgacctgcccgtgctgcatcttccggcatgg
gattgtctgccctatgaccgtgtgtcgcctggcgctgatgcgtcagcacgtaggcttgcc
gcactcgctgccttggcatcgctaaagaaatcgccgcatccagctgtcatcataacgacc
gccaatgctgttctgcaaaaactgccaccgcaggccgcaatcgctgaacaggtgatttcc
gcacgccccggcaatcagcttaatatgaatgatctgagtgcacggcttgagcgtaacgga
tttgagcgtgtctcgaccgtgcgtgacattggcgaatatgcggtgcgcggcggcattctt
gatctttatgcgccgggatcagaagaaccgctgcggctcgatttctttggcgatacactt
gaaacaatccgcgcttttgatccggcctcgcagcgcaccacaggcgcgcgcaaagaattc
gtgcttcagccgatgagcgaaatttcgctctcgccggatatgatcagccgtttccgtaag
aattacgttgcgatgtttggcgcaccacagcgcgatgatgcactttatcaggcaatcagc
gaagggcgtcgctttgctggcatggaacactggctgccgctgttctatgacaacctcgaa
accgtttttgactatgcgggcgacatgccggtggtgttcgatcatttggtgcatgaagcg
ctgaccgaacgtcatacgatggtcgtcgatcattttgagtcgcggttacgacagtcagaa
ggcaaagaacctggcaccgatgcggtgccctataagccggttaagccggaaacgctttat
ctcacgccgcgccaagttgaagcaatcgcagaaacgagtggtctgcgaattgacttaaca
ccttttggcacgccggaagtgtcaggacgctcggttgttcatgctgaggttcataaaggt
cgcagttttgcggaggagcgcgccgcgaccgatgtgaacctgtttgaagcggctgttaag
tatattgccgatctgcgcgtggctggcaaaaaagtgctggtggcggcatggtcggaaggt
tcgctcgaccgcctcctgcaggtgctggatgagcatggccttgaaaaaatcgaaaccgta
gatcgtctatcaaccgtgaaggcgctatcgcgtgacaagatcacggctgcggttctcgcg
gtcgaaagcggctttgacgcaggtgatctggttgtcgtggctgagcaggatattctaggc
gaccgccttatccgacgttccaagcgccggaagcgcgatcaggatttcatttcggaagcc
gcttcgctttcggctggcgatatcgtggtccacgtcgatcacggtattggtcgcttcata
ggtctcaagacaatcacggcagcgggtgcaccgcatgattgtcttgagattcactatgcg
ggcgatgatcggctgttcctgccagttgaaaatatcgagctgctctctcgttttgggtcg
gaaggttcggaagccattcttgataagcttggcggcggcgcctggcagatgcgcaaggcc
aagctcaaaaaacgcctgcttgagattgccggtcatctgatccagattgcagccgagcga
caaatgcgtggcgcaccagtaatgcagccgcctgaaggcctttacgcggaattcgcagcg
cgtttcccttacgatgaaaccgaagatcagctgcgcgccattgatgccatcacggacgat
ctgggtgcaggcaagccgatggatcgcctcatctgcggtgacgttggcttcggcaaaaca
gaagttgcattgcgcgctgcttttgttgcggcgttgagtggctttcaggtagctgtcgtc
gtaccgaccacgcttctatcacgccagcatttcaagactttttcgacgcgcttccatggt
ttgccggtcaatgtcgctcacgcatcgcgtctcgtcggcaccaaagagctggccgccacc
aagaagggccttgaagacggcactgtcgatattgtcgttggcacccatgcgctcttgggt
aactccatcaagatcagaaatctcggcctactcatcattgatgaagagcagcattttggc
gtgaagcacaaagagcggctcaaggaactgaagtcggatattcacgtcctaaccctttcc
gcaacgccaatcccgcgcacattgcagctggcattgacgggcgtgcgtgagctttcgctt
attacgacgccgccagtcgatcgaatggctgtgcgcaccttcgtatcgccgtttgatccg
ctggtgatccgtgaaacattgctgcgcgaacgctatcgtggtggccagagtttctatgtt
tgcccgcgcattgccgatctcacagaaatcgaggaattcctgaaggatcatgtgccggaa
ctgaaagtggccgtggcacatggccagatggcaccaggtttgctcgacgacatcatgaat
gctttttatgacgggcagtatgatgtgctgctgtcgacgaccatcgtggaatcgggcctc
gatattccgacggccaatacgatgatcgtgcatcgtgccgatatgttcggtctggcgcag
ctttatcagttgcgtgggcgtgttggccgctccaagcagcgtgctttcgcgctattcaca
ctgcctgccggtcgcacactgacgcagacagccgaacgccgcctcaaggtcctacaatcg
cttgacacacttggtgcgggcttccagcttgcaagtcatgacatggatattcgcggggca
ggcaatctgcttggtgaagaacaatccggtcatatcaaggaagtgggcttcgagctttat
cagcagatgttggaagaagcggttgcaaccctcaagggcaccattgaggtcgaagatagt
cagtggtcgccgcagattgcaatcggtacggctgtgatgattccagaagcctatgtgccg
gatctgcaattgcgccttgggctgtatcgtcgtcttgcagaccttgaagaaccgcaggaa
atcgatgcattcggcgcagagctgatcgatcgtttcggaccaatgccggaagaagtgcag
catctgctcaagattgtttacattaaggccctctgccgccgtgccaatgtcgaaaagctc
gatgctggtccgaagggcgtggttatccagttccgcaatgcaactttcaacaatccggta
gggctggtgaagatgatcggtgagcagggttcaatggccaagatcagaccagaccagagc
atcgttttcattcgcgactgggcaacgcccgaaaagcgtcttaatggctcggctgtcatt
atgactcaactggccaagatttctactggaagctaa
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