Oceanicola sp. D3: FHY55_00095
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Entry
FHY55_00095 CDS
T06139
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ocd
Oceanicola sp. D3
Pathway
ocd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FHY55_00095 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocd03019
]
FHY55_00095 (pnp)
03016 Transfer RNA biogenesis [BR:
ocd03016
]
FHY55_00095 (pnp)
Enzymes [BR:
ocd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FHY55_00095 (pnp)
Messenger RNA biogenesis [BR:
ocd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FHY55_00095 (pnp)
Transfer RNA biogenesis [BR:
ocd03016
]
Prokaryotic type
tRNA degradation factors
FHY55_00095 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
QDC07742
LinkDB
All DBs
Position
complement(16023..18158)
Genome browser
AA seq
711 aa
AA seq
DB search
MFKITTKSMEWGEETLTLETGRVARQADGSVIATLGETSVMANVTFAKTQKPGQDFFPLT
VHYNEKYYAAGKVPGGFFKREGRPTEKETLTSRLIDRPIRPLFVPGFKNEVLVICTVLSH
DLVNDPDIVAMIAASAALTISGAPFMGPIAAARVGFEDGEYVLNPEVQDMDQLRLNPDQR
LDLVVAGTKDAVMMVESEAYELSEDEMLGAVTFAHEQIQPVIDLIIDLAEEAAKEPFDYQ
PPDYSELYEAVKAAGEADMRAAYAILDKQERTSAVSAAKEKILEALTDEQKEDANLGSAL
KKLESSILRGDVVKTGKRIDGRSTTEVRDIVSEVGLLPRTHGSALFTRGETQGLVVTTLG
TGDDEQIIDALHANYRSNFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALQAVLPA
PTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEEDGDYA
ILTDILGDEDHLGDMDFKVAGTEDGITSLQMDIKVAGITPEIMKTALAQAKDARLHILGE
MSKALTAGRTEFSAHAPRIETMNVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIK
IASPNADCIEKAREMIHSIVAEPEEGKIYNGKVVKIVDFGAFVNFFGKRDGLVHVSQIAN
TRLNHPSDQLTEGQDVKVKLLGFDDRGKVRLSMKVVDQETGEEIKKEEKAD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaattacgacgaaaagcatggagtggggcgaagagaccctcactctcgaaacg
ggccgtgtggcccgccaggccgatggctcggtgatcgccacgctgggcgaaacctctgtc
atggccaacgtgacctttgcgaaaacgcaaaagcccgggcaggattttttcccgctgacc
gtgcactacaacgagaaatactacgccgccggtaaagtccccggtggcttcttcaagcgt
gaaggccgtccgaccgagaaagagacgctcacctcgcgcctgatcgaccgtccgatccgc
ccgctgtttgttcccggcttcaaaaacgaagttctggtgatctgcaccgtgctctcccac
gatctggtcaacgaccctgacatcgtggcgatgatcgccgcttcggccgcgctcaccatc
tccggtgcccccttcatgggcccgattgccgccgcccgcgtcggctttgaagatggcgaa
tatgtgctgaaccccgaagtgcaggacatggaccagctgcgcctgaaccccgaccagcgc
ctcgacctcgtggtcgccggcaccaaggacgcggtgatgatggtggaatcggaagcttac
gagctgtccgaagacgagatgctgggcgccgtgaccttcgcgcatgagcagatccagccg
gtgatcgacctgatcatcgacctggccgaagaggccgccaaagagcccttcgactaccag
ccgccggattactccgagctctatgaggccgtgaaggccgctggcgaagccgacatgcgc
gccgcctacgcgatcctcgacaagcaggagcgcacctctgccgtctccgccgccaaggag
aagatccttgaggcgctgaccgacgagcagaaagaggatgcaaacctcggttcggccctc
aagaagctcgaaagcagcatcctgcgcggtgacgttgtcaaaaccggcaagcggatcgac
ggtcgctccaccactgaggtgcgcgacatcgtcagcgaagtcggcctgctgccccgaacc
cacggttcggcgctgttcacccgtggcgagacgcagggcctcgtggtcaccaccctcggc
accggcgatgatgagcagatcatcgacgcgctgcacgccaactaccgcagcaacttcatg
ctgcactacaacttcccgccctactcggtaggtgaggttggccgcttcggctttaccggt
cgccgcgaaatcggccacggcaagctggcatggcgtgcgcttcaggcggtgctgcccgcg
ccgaccgacttcccctacaccattcgcgtggtctccgagatcaccgaatccaacggctcg
tcctcgatggcctccgtctgtggcggttcgctctcgatgatggacgccggtgtgccgctg
aaggccccggtggccggtgtggccatgggcctggtgctggaagaagacggcgactacgcc
atcctgaccgacatccttggcgacgaggatcacctcggcgacatggacttcaaggtggca
ggcaccgaagacggcatcacctcgctgcagatggatatcaaggttgcgggcatcacgccc
gagatcatgaaaaccgccctggcccaggccaaggacgcccgtctgcatatcctcggcgag
atgtccaaggcgctgaccgctggccgcaccgagttctcggcgcacgccccgcggatcgaa
accatgaacgtgcccaccgacaagatccgtgaagtgatcggctcgggcggcaaggtgatc
cgcgagatcgtcgaggtttcgggtgccaaggtcgacatcaacgacgatggcgtcatcaag
atcgcctcgccgaatgccgattgcatcgagaaggcccgcgagatgatccactcgatcgtc
gccgagccggaagaaggcaagatctacaacggcaaggtcgtgaagatcgtcgacttcggc
gccttcgtgaacttcttcggcaagcgtgacggcctcgtgcacgtcagccagatcgccaat
acccgcctgaaccaccccagcgaccagctgaccgaaggtcaggacgtgaaggtgaagctg
ctgggctttgacgatcgcggcaaggtgcgcctgtcgatgaaagtcgtcgatcaggagacc
ggcgaagagatcaagaaagaagagaaggccgactga
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