Oceanicola sp. D3: FHY55_00980
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Entry
FHY55_00980 CDS
T06139
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ocd
Oceanicola sp. D3
Brite
KEGG Orthology (KO) [BR:
ocd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocd03032
]
FHY55_00980
03400 DNA repair and recombination proteins [BR:
ocd03400
]
FHY55_00980
Enzymes [BR:
ocd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FHY55_00980
DNA replication proteins [BR:
ocd03032
]
Prokaryotic type
DNA Topoisomerases
FHY55_00980
DNA repair and recombination proteins [BR:
ocd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FHY55_00980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Top1B_N_bact
Topoisom_I
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QDC07903
UniProt:
A0A5B8BNB1
LinkDB
All DBs
Position
188869..189852
Genome browser
AA seq
327 aa
AA seq
DB search
MNAAPASLVYYPDSRPGIARRRCGRGFTYTAPDGTTIDDQKERARLKSLGVPPAYEEVWI
SPKVNGHLQATGVDTRARKQYRYHPDWTAYRAATKYAELPAFGEALPAIRRRVARDLTLD
AGEEPFALAAVIAMIDRLSLRVGNSDYAAENGTYGATTLRSRHLRLQDGDLHLGYTSKGG
KKVRRKIGNKRMQQTLQKLDDLPGAELVTWVDEEGEPRTISSSRVNDWLADITGTPGITA
KTFRTWSGSVAALEAASLAETVTIKGMSEAAAKRLGNTPTIARNSYIHPAVIDLASDPSA
LPDTAQDRPGLRLAERRLLKLIARWTP
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgcgcccgcctccctcgtctactaccccgacagccgccccggcattgcccgc
cgccgctgcgggcgcggcttcacctataccgcgccggatggcaccaccatcgacgaccag
aaagaacgcgcacgcctcaagtcacttggcgtcccgcctgcctacgaggaagtctggatc
agccccaaggtcaacggccacctgcaagccaccggcgtcgacacccgcgcgcgcaaacag
tatcgctaccacccggattggaccgcctatcgcgccgccaccaaatacgccgaactcccc
gctttcggagaggccctgcccgccattcgccgccgtgtcgcccgcgacctcaccctcgac
gcgggcgaagagcctttcgccctcgccgccgtcatcgccatgatcgacaggctctctctg
cgggtcggaaacagtgactatgccgccgaaaatggcacctatggcgccaccacgctccgc
tcccgccacctgcggctgcaggatggcgacctgcaccttggctatacctccaaaggcggc
aagaaggtgcggcgcaagatcggcaacaagcggatgcagcaaaccctgcaaaagctcgat
gacctccccggcgccgagctggtgacatgggtggatgaggagggcgagccgcgcaccata
agctcctcgcgcgtcaacgactggctggccgacatcaccggaacgccgggcatcaccgcc
aaaaccttccgtacatggtcaggctccgtcgcggcgctggaggcggcgagtttggccgaa
acggtcacgatcaagggcatgtccgaggctgccgccaagcgcctcggcaacacccccacc
atcgcccgcaacagctacatccaccccgccgtcatcgacctcgccagcgacccatccgcc
ctgcccgataccgcgcaagaccgccccggcctgcgcctcgccgagcgacggctgctaaag
ctcatcgcccgctggacaccctag
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