Oceanicola sp. D3: FHY55_01525
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Entry
FHY55_01525 CDS
T06139
Symbol
dnaQ
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ocd
Oceanicola sp. D3
Pathway
ocd03030
DNA replication
ocd03430
Mismatch repair
ocd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FHY55_01525 (dnaQ)
03430 Mismatch repair
FHY55_01525 (dnaQ)
03440 Homologous recombination
FHY55_01525 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocd03032
]
FHY55_01525 (dnaQ)
03400 DNA repair and recombination proteins [BR:
ocd03400
]
FHY55_01525 (dnaQ)
Enzymes [BR:
ocd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FHY55_01525 (dnaQ)
DNA replication proteins [BR:
ocd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FHY55_01525 (dnaQ)
DNA repair and recombination proteins [BR:
ocd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FHY55_01525 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
QDC08003
LinkDB
All DBs
Position
295099..295791
Genome browser
AA seq
230 aa
AA seq
DB search
MREIVLDTETTGFDPFSGDRIVEIGAVELVGHMPTGNHYHQYINPQRDMPTEAFQVHGIS
EEFLADKPLFAAIAQDFLDFIGDAKLVIHNAAFDMKFLNAELGWVKKPLIPDDRAIDTVA
MARKKFPGSPASLDALCRRFGITTERELHGALLDSQILADVYLELIGGRQPGLVLSETRS
RSTSDTVDTNWRPSPRPQALPARLTESENAAHQAFVEKLGDAAVWKRFAD
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgagatcgtgcttgatactgaaaccaccgggtttgatccgttcagcggagaccgg
attgttgagatcggtgcggtggagctggtggggcatatgccgacaggcaaccactatcac
caatacatcaatccgcagcgcgacatgccgactgaagcctttcaagtgcatggtatcagt
gaagaatttctggccgacaagccgcttttcgcagccatcgcgcaggactttctggacttc
atcggcgatgcaaagctggtgatccacaacgccgccttcgacatgaaattcctgaatgcg
gagttgggttgggtcaagaagccgctcatcccggacgatcgggcgattgatacggtggcg
atggcgcgcaagaagtttccgggctcgccagcatcgttggatgcgctgtgccggaggttt
ggcattaccacggagcgcgagctgcatggggccttgctcgacagccaaattttggccgat
gtctatttggagctgattggcggccgccagccggggttggtgctttcggaaacgagaagc
cggagcacgtctgacacggtggataccaattggcgcccgtcacctcgcccgcaggcgctg
cccgcgcggctgacagaaagtgagaacgccgcacaccaggcttttgtggaaaagctcggt
gatgcggcggtctggaaacggtttgcggattag
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