Oceanicola sp. D3: FHY55_01920
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Entry
FHY55_01920 CDS
T06139
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
ocd
Oceanicola sp. D3
Pathway
ocd00521
Streptomycin biosynthesis
ocd00523
Polyketide sugar unit biosynthesis
ocd00525
Acarbose and validamycin biosynthesis
ocd00541
Biosynthesis of various nucleotide sugars
ocd01100
Metabolic pathways
ocd01110
Biosynthesis of secondary metabolites
ocd01250
Biosynthesis of nucleotide sugars
Module
ocd_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
ocd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
FHY55_01920 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
FHY55_01920 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
FHY55_01920 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
FHY55_01920 (rfbB)
00525 Acarbose and validamycin biosynthesis
FHY55_01920 (rfbB)
Enzymes [BR:
ocd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
FHY55_01920 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
NAD_binding_4
adh_short
adh_short_C2
Glyco_transf_4
Sacchrp_dh_NADP
NmrA
Motif
Other DBs
NCBI-ProteinID:
QDC08075
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All DBs
Position
377973..379010
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AA seq
345 aa
AA seq
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MKLLVTGGAGFIGSAVVRRAIRQGHEVVNLDALTYAACLENVASVANHPGYRFEHADIRD
RPALDAILARHKPDAIMHLAAESHVDRSIDGPATFIETNVLGTFHLLEAARAYWQESGRP
ETFRFHHVSTDEVFGSLGAEGQFTETTPYDPRSPYSASKASSDHLVRAWHETYGLPVVMT
NCSNNYGPFHFPEKLVPVVILNALEGQPIPVYGRGENVRDWLYVEDHADALLTVIERGVL
GRSYNIGGENEARNIDLVRMICAILDEARPAQRPREELIAFVADRPGHDLRYAIDPSRIA
TELGWRPSVTLREGLEKTVAWYLANEAWWQALRDRDGVGKRLGTG
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgctggtgacaggaggcgcgggctttattggctcggcggttgtgcggcgcgcc
atccggcagggccatgaggtggtgaacctcgatgccctgacctatgccgcctgcctcgaa
aacgtggccagcgtggcaaaccatccgggctatcgcttcgagcatgccgatatccgcgac
cggcccgcgctggatgcgattttggcccggcacaagccggatgcgatcatgcatctggcc
gccgagagccatgtggacaggtcgatcgacggccccgcgacctttatcgaaaccaatgtg
ctcggcacctttcacctgctggaagcggcccgcgcctattggcaggagtccgggcggcca
gagacgtttcggtttcatcacgtgagcaccgatgaggtgtttggctcgctgggcgcggaa
ggccagtttaccgaaaccacgccctacgacccgcgcagcccctattcggcctcgaaggcc
agctccgaccatctggtgcgggcttggcacgagacctatggcttgccggtggtgatgacc
aattgttccaacaattacgggcctttccacttccccgaaaaactggtgccggtggtgatc
ctgaacgccttggagggccagccgattccggtgtacgggcggggcgaaaacgtgcgggac
tggctctatgtggaggaccacgccgatgcgctgctgacggttatcgagcgcggcgtgctg
ggccgaagctacaacatcggcggtgaaaacgaggcgcgcaacatcgaccttgtgcggatg
atctgcgccattctcgacgaagcccgcccggcacagcggccccgcgaggagctcatcgcc
tttgtggcagaccggcccggccatgacctgcgctacgccatcgacccgagccgcattgcc
acagaactcggctggcggccctcggtgacccttcgcgaagggttggagaaaaccgtggct
tggtatctggcaaatgaagcctggtggcaggcgctccgcgaccgggacggtgtgggcaag
cggctgggaaccggatga
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