Oceanicola sp. D3: FHY55_02325
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Entry
FHY55_02325 CDS
T06139
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ocd
Oceanicola sp. D3
Pathway
ocd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ocd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FHY55_02325 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocd03021
]
FHY55_02325 (rpoB)
03400 DNA repair and recombination proteins [BR:
ocd03400
]
FHY55_02325 (rpoB)
Enzymes [BR:
ocd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FHY55_02325 (rpoB)
Transcription machinery [BR:
ocd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FHY55_02325 (rpoB)
DNA repair and recombination proteins [BR:
ocd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FHY55_02325 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QDC08149
LinkDB
All DBs
Position
452741..456877
Genome browser
AA seq
1378 aa
AA seq
DB search
MATTLLGHKRFRRYYGKIREVLEMPNLIEVQKSSYDLFLKSGDQPEPTDGDGIMGVFQGV
FPIKDFNETAVLEFVKYELEKPKYDTEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYDTVSYKLKK
NKGWVTKFFPERVRGTRPAYDLVDAKTGEVIAEAGKKVTPRAVKKIIDEGEITDLLIPFE
HIVGKFVAKDIINEETGAIYVEAGDELTWETDKDGEVTGGSLKELVDAGITDIPVLDIDG
VNVGAYIRNTMANDKNMNRDTALMDIYRVMRPGEPPTVEAASTLFDSLFFDSERYDLSAV
GRVKMNMRLDLDAEDTQRTLRKEDIVACIKALVELRDGKGEVDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVSHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINNLASFAR
VNKYGFIETPYRRVENGKVTDEVHYMSATEEMRHTVAQANASLDEDGKFTNDMVNTRQSG
EYTLAPNENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQKQAVPLLQAEAPLV
GTGIERKVAIDSGAAIQAFRSGIIDQVDAQRIVVRATEDLEPGDPGVDIYRLRKFQRSNQ
NTCINQRPLVKVGDTVVKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IAKDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDFGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDELAILDRNIYARLKDMILGKMAIKGPKGVKPKSEVTEEL
LDSLSRGQWWQLAVGEEHEAQAIEALNAQYEAQKRVLDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPVEDMPFLGDGTPVDFVLNPLGVPSRMN
VGQILETHMGWASRGLGIQVDEALGEYRRSGDLTPVRDAMKIAYGEEAYEEHIQSLDEGM
ILETAGNVTRGVPIATPVFDGAKEADVNDALTRAGFSESGQSILFDGRTGEQFARPVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGIPESFNVLVKEVRGLGLNMELLDAEGEE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaccctcctcggccacaaacgtttccgccgttactacggcaaaatccgcgaa
gttctggagatgccgaacctcatcgaggttcagaaaagctcctacgacctgtttctgaaa
tccggcgaccagcccgagcccaccgatggtgatggcatcatgggcgtgtttcagggtgtt
ttcccgatcaaggatttcaacgaaaccgccgtgcttgaattcgtcaagtacgagctggaa
aagcccaagtacgacaccgaagagtgccagcagcgcgacatgacctacagcgccccgctg
aaggtgacgctgcgcctcatcgtgtttgatgtggacgaagacactggcgccaagtcggtg
aaggacatcaaggaacaagacgtgttcatgggcgacatgcccctgatgacgcccaacggc
accttcgtggtgaacggcaccgagcgtgtgatcgtttcccagatgcaccgttcgcccggc
gtgttctttgaccacgacaaaggcaagacccacgccagcggcaagctgctcttcgcctgc
cggatcatcccctatcgcggctcctggctggacttcgagtttgacgccaaggacatcgtc
tttgcgcgcatcgaccgtcgccgcaaactgcccgtgaccaccctgctctatgccctcggg
ctggatcaggaggcgatcatggacgcctactacgacacggtcagctacaagctgaagaag
aacaagggctgggtcaccaagttcttccccgagcgcgtgcgcggcacccgcccggcctat
gaccttgtcgacgccaagaccggcgaagtgattgccgaagctggcaagaaggtgacgccc
cgcgcggtgaagaagatcatcgacgagggtgagatcaccgatctgctgatccccttcgag
cacatcgttggcaagtttgtcgccaaggacatcatcaacgaagaaaccggcgcgatctac
gtcgaggccggcgatgagctgacttgggaaaccgacaaggacggtgaagtgactggcggc
tccctgaaggagctggtggacgcgggcatcaccgatattccggtgctcgacatcgacggc
gtgaacgtgggtgcctacatccgcaacaccatggcgaacgacaagaacatgaaccgcgac
accgcgctcatggacatctaccgcgtcatgcgccccggcgagccgcccaccgtggaagcc
gccagcaccctgtttgacagcctgttctttgacagcgagcgctacgacctcagcgccgtg
ggccgcgtgaagatgaacatgcgcctcgacctcgatgccgaagacacccagcgcacgctg
cgcaaggaagacatcgtggcctgcatcaaggccctcgtcgagctgcgtgacggcaagggc
gaggtggacgacatcgaccacctcggcaaccgccgcgtccgctcggttggcgagctgatg
gagaaccagtatcgcgtgggtctgctccgcatggagcgggcgatcaaggagcgcatgagc
tctgtcgagatcgacacggtgatgccgcaggatctgatcaacgccaagcctgccgctgcc
gcggtgcgcgagttcttcggctccagccagctgtcgcagttcatggaccagaccaacccg
ctttcggaagtctcccacaagcgtcgcctttcggcgcttggtccgggcggcctgacccgt
gagcgtgccggctttgaggtgcgcgacgtgcaccccacccactatggccggatgtgcccg
attgaaacgccggaaggcccgaacatcggcctgatcaacaacctcgccagctttgcgcgg
gtcaacaagtacggcttcatcgaaacgccctatcgccgcgtcgaaaacggcaaggtgacc
gatgaagtgcattacatgtcggccaccgaagagatgcgccacacggttgcacaggccaac
gccagcctcgacgaggatggcaagtttaccaacgacatggtcaatacccgccagtcgggt
gaatacacgctggcccccaacgagaacgtggacctgatcgacgtgtcgccgaaacagctg
gtttcggttgccgcctcgctcatccccttcctcgaaaacgacgacgccaaccgcgccctc
atgggctcgaacatgcagaagcaggccgtgccgctgctgcaggccgaagctccgcttgtg
ggcaccgggatcgagcgcaaggtggccatcgactccggcgccgccattcaggcgttccgc
agcgggatcatcgaccaggttgatgcccagcggatcgttgtgcgcgccaccgaagacctc
gagccgggcgatccgggcgtggacatctaccgtctgcgcaagttccagcgttccaaccag
aacacctgcatcaaccagcgtccgctggtgaaggtgggtgacacggtggtgaagggcgag
gttatcgctgacggtccctcgaccgacatgggcgaactggccctcggcaagaacgtcgtc
gtcgccttcatgccgtggaacggctacaactacgaggactccatcctcatctccgagcgc
atcgccaaggatgacgtgtttacctcggtccacatcgaagaattcgaagtggccgcgcgc
gacaccaagcttggcccggaagagatcacccgcgacatcccgaacgtcggcgaggaagcc
ctgcgcaacctcgacgaagccgggatcgtgtatatcggtgccgaagttggccccggtgac
attctcgtcggcaagatcaccccgaagggcgaaagcccgatgaccccggaagagaagctg
cttcgcgcgatcttcggcgaaaaggcctctgacgtgcgcgacacctcgctgcgtctgccc
ccgggcgatttcggcacggtcgtggaagtgcgcgtcttcaaccgccacggcgtggagaag
gacgagcgggcgcttcagattgagcgtgaagaggtggaacgccttgcacgtgaccgggac
gacgagctcgcgatcctcgaccgcaacatctatgcccgcctgaaggacatgatcctgggc
aagatggcgatcaagggcccgaaaggcgtgaagccgaagtcggaggtcaccgaagagctg
ctcgacagcctgtcgcgcggccagtggtggcagcttgccgtgggcgaagagcatgaggcg
caggccatcgaggctctgaacgcgcaatacgaggcgcagaagcgcgtgctcgatgcccgt
ttcgaggacaaggtggagaaggtgcgccgcggcgacgatctgcccccgggcgttatgaag
atggtcaaggtcttcatcgcggtgaagcgcaagcttcagccgggcgacaagatggccggt
cgtcacggcaacaagggtgttatctcccgcgttgtgcccgtggaagacatgcccttcctc
ggtgacggcactcccgtcgacttcgtgctcaacccgctcggcgtgccgtcgcggatgaac
gttggtcagattctcgaaacgcacatgggctgggcctctcgcgggcttggcattcaggtg
gacgaggcgcttggcgaataccgccgctccggcgacctgaccccggtgcgcgacgcgatg
aagattgcctatggcgaagaggcctatgaggagcacatccagtcgctcgacgagggtatg
atcctcgagactgctggcaatgtgacccgcggtgtgccgattgccacgccggtctttgac
ggggccaaggaagctgacgtgaacgatgcgctcacccgcgcaggcttcagcgaaagcggc
cagtcgatcctgtttgatggccgcaccggcgagcagtttgcccgcccggtgaccgtgggc
atcaagtatctgctgaagctgcaccaccttgtggacgacaagatccacgcacgttcgacc
ggcccctacagccttgttacccagcagccgctcggtggtaaggcccagttcggtggccag
cgtttcggggaaatggaagtctgggctctggaagcctatggcgccgcctacacccttcag
gaaatgctgaccgtgaagtcggacgacgtggctggccggaccaaggtgtatgagtcgatc
gtcaagggcgaggacaacttcgaggcgggcattcccgagagcttcaacgtgctcgtcaag
gaagtccgcggcctcggcctgaacatggaactcctggatgcggagggcgaggaataa
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