Oceanicola sp. D3: FHY55_02520
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Entry
FHY55_02520 CDS
T06139
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ocd
Oceanicola sp. D3
Pathway
ocd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FHY55_02520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocd03019
]
FHY55_02520
Enzymes [BR:
ocd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FHY55_02520
Messenger RNA biogenesis [BR:
ocd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FHY55_02520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
QDC08187
LinkDB
All DBs
Position
complement(483370..484686)
Genome browser
AA seq
438 aa
AA seq
DB search
MLGLPPKLLANLAEMNITKPTPIQTKAIPHAMNGRDVMGLAQTGTGKTAAFGLPIVSALL
RIEGKPDPKAVRGLILAPTRELAKQIVENLQGYAKGTQLRTNLVVGGVSINPQMQKLGRG
TDLLVATPGRLIDLLERKAVRLDKARFLVLDEADQMLDMGFIHALRQIAPLLPKDRQTML
FSATMPKLMEELSTSYLTDPVKIETAPAGKPADKIDQCLHFVDQGDKQSLLIEHLAKHPK
EAALVFSRTKHGAERIKKNLEKAGFAAGSIHGNKSQGQRDRALSGFREGELMVLVATDVA
ARGIDIPEVRYVYNYDMPNVPDNYVHRIGRTARAGRDGTAIAYVSAEEMGELKDVQKVMG
KSIPVASGEAWEPVKRPTRGGGGGRGKPGGGGGRRRGGGGGGGGQKAARPAAAAPKPGGQ
KRRRPRRSKGGGGNRAAS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgctgggccttccgcccaaactcctggccaacctggccgaaatgaacatcaccaagccg
acgccgatccagaccaaggccatcccccacgccatgaacgggcgtgacgtgatgggcctt
gcccagaccggcaccggcaaaaccgccgccttcggcctgcccatcgtttccgccctgctg
cggatcgaaggcaagcccgacccgaaggccgtgcgcggcctcatccttgcccccacccgc
gaactcgccaagcagatcgtcgagaacctgcagggctacgccaagggcacgcagctgcgc
accaacctcgtggttggcggtgtttccatcaacccgcagatgcagaagctgggccgaggc
accgacctgctggtggccaccccaggccggttgatcgacctgctcgagcgcaaggccgtg
cggctcgacaaggcccgcttcctcgtgctcgacgaggccgaccaaatgctcgacatgggc
ttcatccatgccctgcgccagatcgcgccactgctgccgaaagaccggcagaccatgctg
ttctcggccaccatgccgaaactgatggaagagctctcgacctcttacttgaccgacccg
gtgaagattgaaaccgcaccagcaggcaagcccgccgacaagatcgaccagtgcctgcac
ttcgtcgatcagggcgacaagcaatcgctgctcatcgagcacctcgccaagcaccccaaa
gaggcggcgctggtgttttcgcgcaccaagcacggcgcggagcggatcaagaaaaatctt
gagaaggctggctttgccgcaggctcgattcacggcaacaagagccagggccaacgcgac
cgggcgctttcaggcttccgtgaaggcgagctgatggtgctggtggccactgatgtggct
gcgcgcggcatcgacatccccgaggtgcgctatgtctacaactacgacatgccaaacgtg
cccgacaactacgtgcaccgcatcgggcgcaccgcccgcgcgggccgtgacggcaccgcc
atcgcctatgtctccgccgaggagatgggcgagctgaaggatgtgcagaaggtgatgggc
aagagcatccccgtggcctccggcgaggcatgggagccggtcaagcgcccaacccgtggc
ggcggcggtggccgtggcaagcccggtggcggtggtggtcggcgtcgcggtggcggcggc
ggcggtggtggccagaaggccgcccgccccgcagcggcagcgcccaagcccggcgggcag
aagcgccgcaggccgcgccgctccaagggtggtggcggcaaccgcgcagcctcctga
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