Oceanicola sp. D3: FHY55_06575
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Entry
FHY55_06575 CDS
T06139
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ocd
Oceanicola sp. D3
Brite
KEGG Orthology (KO) [BR:
ocd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocd03032
]
FHY55_06575 (topA)
03400 DNA repair and recombination proteins [BR:
ocd03400
]
FHY55_06575 (topA)
Enzymes [BR:
ocd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FHY55_06575 (topA)
DNA replication proteins [BR:
ocd03032
]
Prokaryotic type
DNA Topoisomerases
FHY55_06575 (topA)
DNA repair and recombination proteins [BR:
ocd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FHY55_06575 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QDC08927
UniProt:
A0A5B8BPL5
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All DBs
Position
complement(1288585..1291197)
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AA seq
870 aa
AA seq
DB search
MPVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEHEFEMKWEVASDSKK
HVAAIANALKDDNALILATDPDREGEAISWHLQEALTKRKAIKKDTPVSRVTFNAITKDA
VTEAMANPRQVDMELVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVE
REMEIEAFRAREYWSVKALLDTPRGQTYEARLTVLGGKKLERYDIENETAAELAVQAINS
RDLTVKSVEAKPNTRNPSPPFMTSTLQQEASRKFGMGARACMGTAQRLYEAGHITYMRTD
GIDMAPEAVTAAREAIGERFGKDYVPGEPRIYKNKAKNAQEAHECIRPTDMTKDSKALNL
EPEQARLYDLIWKRTLASQMASAKFERTTVTVGSADGQVELRATGQVVLFDGFLKIYEEG
RDDEVVDDDDRRLPQVSEGEAAGKKQITPEQHFTQPPPRYTEATLVKRMEELGIGRPSTY
ASIVTTIQDREYVRKDKNRLIPEDKGRLVIAFLSNYFRRYVGYEFTAKLEEELDEISAGD
AQWQAVLASFWRDFKAAIEETSELRITEVLEKINEVLEPHLFPPLPEGGDPRLCPHCGKG
RLSMRTARSGGAFIGCSNYPECRYTRPFGPPDPEAEKSAIPPEGKLLGEDGGDKIWVMKG
RFGPYVQRGEVTEDNKKPPRQSVPKEWKPEELELATAVKLLALPRLIGTHPEDGVNVWAN
IGRYGPYLKHAESTSDRGGTNANLEGLDEVWEVGMNRAVQLLAEKVASRGGRGAAKTLRE
LGEHPEAGGVVAIMEGKYGPYVKWDKINATLPKGEDPEKFTMDAAVELIAEKAAQKGKKR
PAAKKATAKKTTAKKPAAKKAPAKKTAAKK
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgccagttgtcgttgtcgagtcccccgccaaggccaagacaatcaacaaatatctgggc
tccgattacaccgttctggcctcttacggccacgtgcgcgacctgcccccaaaggacggt
tcggtggaccccgagcatgagttcgagatgaaatgggaggtggcctccgacagcaaaaag
cacgtggccgccatcgcaaacgccctgaaggatgacaacgcgctcatcctcgcaaccgac
cccgaccgcgagggcgaggcgatttcttggcacctgcaggaggctctgaccaagcgcaag
gcgatcaagaaagatacgccggtgtcgcgcgtgaccttcaacgccatcaccaaggatgcg
gtgaccgaggccatggccaacccgcgccaggtcgatatggagctggtcgaggcctacctc
gcccgccgcgcgctcgattatctcgtcggcttcaacctctcccccgtgctctggcgcaag
ctgcccggtgcgcgctccgcaggccgcgtccagtcggtctgcctgcgcctcatcgtcgag
cgcgagatggagatcgaggctttccgcgcccgtgaatactggagcgtgaaggccctgctc
gacacgccgcgcggccaaacctacgaggcccgcctcaccgtgctcggtggcaaaaagctt
gagcgctacgacatcgaaaacgaaaccgccgccgagctggcggtgcaggcgatcaattcg
cgtgacctcaccgtcaaatcggtcgaggccaagcccaacacccgcaacccctcgccgccc
ttcatgacctccacgctccagcaggaggcgagccgcaagttcggcatgggcgcccgcgcc
tgcatgggcaccgcccagcgtctctacgaggccgggcacatcacctacatgcggacagat
ggcatcgacatggcccccgaagccgtgacggcggcgcgcgaagccatcggcgagcgcttc
ggcaaagactacgttccgggcgagccgcgcatctacaagaacaaggccaagaacgcgcag
gaagcccacgagtgtatccgccccacggatatgaccaaggattccaaggccctgaacctc
gaacccgagcaggcccggctctatgatctgatctggaagcgcacgttggcctcccagatg
gcctccgccaaattcgagcgcaccactgttaccgtcggcagcgccgatgggcaggttgag
ctgcgcgccaccgggcaggtggtgctctttgacggcttcctgaagatctacgaagagggc
cgcgacgacgaggtggtggatgatgacgaccgccgcctaccgcaggtttccgagggcgaa
gccgcgggcaaaaagcagatcaccccagagcagcacttcacccagcccccgccccgctac
accgaggccacgctggtgaaacggatggaagagctgggcatcggccgcccctccacctac
gcctcaattgtcaccacgattcaggatcgtgagtatgtccgcaaagacaagaaccgcctg
atccccgaagacaagggccggctggttattgcctttctgtccaactacttccgccgctac
gtgggctatgagttcactgccaagctggaagaagagctcgacgagatttccgccggtgac
gcccagtggcaagcggtgcttgcctccttctggcgtgatttcaaagccgcgatcgaagag
acctccgagctgcgcatcaccgaggtgctggaaaagatcaacgaggtgctcgaaccgcac
ctgtttcccccgctccccgagggtggcgacccccgcctttgccctcattgcggcaagggc
cggctctcgatgcgcaccgcccgctccggcggcgccttcatcggctgttccaactacccc
gagtgccgctacacccgccccttcggcccgcccgatccggaagccgagaaaagcgcgatc
ccgcccgagggcaagttgctgggcgaggatggcggcgacaagatttgggtgatgaagggc
cgctttggcccctacgtccagcgcggcgaggtgacggaagacaacaagaagcccccgcgc
cagtcggtccccaaggaatggaagcccgaagagcttgagctggccaccgccgtcaagctg
ctggccctgccccgcctgatcggcacccaccccgaagatggcgtgaacgtctgggccaac
atcgggcgctacggaccctacctgaagcacgccgaaagcacgtcggatcggggcggcacc
aatgccaacctcgaagggctcgacgaggtctgggaagtcggtatgaaccgcgcggtgcag
cttctggccgaaaaggtcgcctcccggggcgggcgcggcgccgcgaaaaccctccgtgag
ctgggcgaacatcccgaggccggtggcgtcgtggcaatcatggagggcaagtacggcccc
tacgtgaaatgggacaagatcaacgccactctgcccaagggcgaagaccccgagaaattt
accatggatgccgccgttgagctgattgccgagaaggccgcgcagaagggcaagaagcgc
cctgcagcaaagaaggcgacagccaagaaaacaacggccaagaagcctgccgccaagaag
gccccggcaaagaaaaccgcggcgaagaaatag
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