Oceanicola sp. D3: FHY55_11480
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Entry
FHY55_11480 CDS
T06139
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ocd
Oceanicola sp. D3
Pathway
ocd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FHY55_11480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocd03400
]
FHY55_11480 (mfd)
Enzymes [BR:
ocd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FHY55_11480 (mfd)
DNA repair and recombination proteins [BR:
ocd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FHY55_11480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SecA_DEAD
AAA_16
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDC09829
UniProt:
A0A5B8BZ87
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All DBs
Position
2270734..2274177
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AA seq
1147 aa
AA seq
DB search
MAETTRITLGGAPEGFDALLIARELERGAPVVHCARDDKRLAEMRAALAFFAPNVPVIEF
PGWDCLPYDRVSPNPDISARRMATLSALASGMSGRFVVLTTLNAATQRVPAKALVESSSF
VAVVGERVDEAGLRDFLVRMGFSQAPTVLEPGDFAVRGGIIDIYPPGDGGPVRLDLFGDV
LDGARRFDPATQRTTEKLTRVELSPASEVVLDEAAITRFRQNYRIEFGAAGSDDPLYEAV
SAGRKHAGFEHWLPLFHESLDTFFDYLPDASVMLDDQFTPARLARWEGIVDSYENRREAA
AVKARMGGSYKAAPPAQLYLDDSAWEAAMQRRRVIQLSPLPQGTGPGVLDAGGRIGRNFS
PERQQETVSLFGALKTHVEAQRRAGQVVVASYSEGARERLSGLMADEGLEGATPITDWRD
VPEGKGGVYLAIWPLEHGFTEPGLTVISEQDVLGDRLIRAPKRKRRAENFLTEAQSLSPG
DLIVHVDHGVGRYMGLEVVNALGADHEMIHLEYADAARLYLPVENIELLSRYGHEEGLLD
KLGGGAWQAKKARLKERIRIAAEKLMRTAAERMLRKAPVLEPVPHAWEEFSARFPYTETD
DQLKAIAEVLEDLEAGRPMDRLICGDVGFGKTEVAMRAAFVAAMQGKQVAVIAPTTLLAR
QHAQGFAERFKGFPLKVRQLSRFVPAKQATDTRKGLADGTVDIVIGTHAVLAKNIRFKEL
GLLIIDEEQHFGVGHKERLKEMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDR
LAIRTYVSEFDPVTVREALLREHYRGGQSFYVVPRIKDLPEIEEFLKEQVPEVSYVVAHG
QMAAGELDDKMNAFYDGKFGILLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIRGRV
GRAKTRAYAYLTTRPRIPLTDTAEKRLRVLGSLDSLGAGFTLASQDLDIRGAGNLVGEEQ
SGHVKEVGYELYQSMLEDAISKIKSGEAEGLLEDDGQWAPQINLGVPVLIPDAYVPDLDV
RLGLYRRLSSLTTKVELEGFAAELIDRFGPLPKEVNTLMLIVRIKAMCKRAGIAKLDGGP
KGGTVQFHNDKFANPAGLVEYIQAQNGFAKIRDNKLVVRRDWAKASDKIKGAYAIARDLA
EKVKAKA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggccgagacgacgcgtataacgctgggcggtgcgcccgaggggtttgatgccctgctg
atcgcccgcgagttggagcgcggcgcgcccgtggtgcattgcgcccgcgatgacaagcgg
ctggccgagatgcgggcggcgctggccttttttgcgccgaatgtgcccgtcatcgagttc
cccggctgggattgcctgccctacgaccgggtgtcgcccaaccccgacatctcggcccgc
cgcatggccacgctttcggcgctggccagcggcatgtctggccggttcgtggtgctaacc
acgttgaacgcggccacccagcgcgtgccggccaaggcgctggtggagtcttccagcttt
gtggctgtggtgggcgagcgggtggacgaggccggcctgcgtgattttctggtgcgtatg
ggctttagccaggccccgacggtgctggagccgggcgattttgccgtgcgcggcggcatc
atagatatttacccgcccggcgatggcggcccggtgcggcttgatcttttcggcgatgtg
ctcgacggggcccgccggtttgatccggcgacccagcgcaccaccgaaaagctgacgcgg
gttgagctgtctccagcctccgaggtggtgctggacgaggcggcgattacccggtttcgc
cagaactaccggatcgagtttggcgcggccggctcggatgacccgctgtacgaggccgtc
agcgcaggccgcaaacatgccggtttcgagcactggctgccgctgtttcacgagtcgctc
gacaccttcttcgactacctgcccgacgcatcggtgatgctggatgaccagtttaccccc
gcccggctggcgcggtgggagggcatcgtggacagctatgaaaaccggcgcgaggcggcg
gcggtgaaggcgcggatggggggcagctacaaggccgccccgccagcgcagctctacctt
gatgacagcgcttgggaggcggcgatgcagcgccgccgggtgatccagctttcgccgttg
ccgcagggcaccgggccgggcgtgctggatgcgggcgggcggatcgggcgcaacttctct
cccgagcgacagcaagaaactgttagccttttcggggccttgaagacccatgttgaagcg
cagcgccgggcggggcaggtggtagtggcctcctactccgaaggcgcgcgcgagcggctc
tctggccttatggccgatgaggggttggagggcgcaacgccgatcaccgactggcgcgac
gtgcccgagggcaagggcggcgtttaccttgcgatctggccgctggagcatggcttcacc
gagccgggcctgacggtgatttccgagcaggatgtgttgggcgacaggctgatacgcgcg
cccaagcgcaagcggcgggccgaaaacttcctgacggaagcgcaaagcctcagccccggt
gatttgatcgtgcatgtcgatcatggcgtcggtcgctacatggggcttgaggtggttaat
gcgcttggcgcggatcacgagatgatccacctcgaatatgccgatgctgcgcggctctac
ctgccggtggaaaacatcgagctgctttcgcgctatggccacgaagaggggctgctcgac
aagctgggcggcggcgcgtggcaggccaagaaggcccggctgaaagagcgcattcgcatt
gccgccgaaaagctgatgcgcaccgccgccgagcggatgctgcgaaaagcgcccgtgctg
gagcccgtgccccatgcgtgggaagagttctcggcccgcttcccctacaccgagacggat
gatcagctgaaagccatcgccgaggtgctggaagaccttgaggcaggccgcccgatggac
cggctgatttgcggcgatgtcggctttggcaaaaccgaggtggcgatgcgcgcggccttc
gtggcggcgatgcagggcaagcaggtggccgtgattgcccccaccacgctgctggcccgc
cagcacgcgcagggttttgcagagcggttcaagggtttcccgctgaaggtacgccagctt
tcgcgctttgtgcccgccaagcaggccaccgacacccgcaaggggctggccgatggcaca
gttgatatcgtgatcggcacccacgcggtgctggccaagaacatccgcttcaaggagctg
ggcctgctgatcatcgacgaagagcagcactttggcgttggccacaaggagcggctgaag
gagatgcggtctgacatccacgtgctcacgctgacggccacgccgattccacgcacgctc
cagctttcgcttaccggcgtgcgcgatctttcgatcatcggcaccccgcccgtcgaccgc
ctcgccattcgcacctatgtgagcgagttcgatccggtgacggtgcgcgaggcgctgctg
cgcgagcattaccgcggcgggcagagcttttacgtggtgccgcggatcaaggatttgccg
gagatcgaggagttcttgaaagagcaggtgcccgaggtcagctatgtggtggcgcacggc
cagatggcggcgggcgaactggatgacaagatgaacgccttttatgacggcaagttcggc
atcctgctggcgacaacgattgttgaaagcggcctcgatatccccaccgccaacaccatg
atcgtgcatcgcgccgacatgttcggccttgcccagctttaccagatccggggccgcgtt
gggcgcgccaaaacgagggcctacgcctacctcaccacccgaccgcgcattccgctaacg
gacaccgccgagaagcggttgcgggtgcttggcagcctcgacagccttggcgcgggcttc
acactggccagccaggatctggatattcgcggcgctggcaatctggtgggtgaggagcag
tcgggccatgtgaaagaggtcggctacgaactttatcagtcgatgctggaggatgcgatt
tccaagatcaaatccggcgaggccgaggggctgctggaggatgacgggcaatgggcaccg
cagattaaccttggcgttcctgtcctgattccagatgcttacgtgcccgatcttgatgtg
cgcctcgggctttatcgacggctctcctcactgaccaccaaggtcgagctggagggcttt
gccgccgagctgatcgacaggttcggcccgctgcccaaagaggtgaacaccctcatgctc
atcgtgcggatcaaggcgatgtgcaaacgcgcaggcattgctaagctcgatggcgggccc
aagggcgggacggtgcagtttcacaacgacaaattcgccaacccggcggggctggttgag
tatattcaggcgcagaacggattcgccaaaatccgtgacaacaagctggtggtgcggcgc
gattgggccaaggcctctgacaagatcaaaggggcctatgcgattgcccgcgatctcgca
gagaaggtgaaggccaaggcgtaa
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