KEGG   Oceanicola sp. D3: FHY55_14125
Entry
FHY55_14125       CDS       T06139                                 
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
ocd  Oceanicola sp. D3
Pathway
ocd03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:ocd00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    FHY55_14125 (tssM)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:ocd02044]
    FHY55_14125 (tssM)
Secretion system [BR:ocd02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   FHY55_14125 (tssM)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related IcmF_C IcmF_helical Phage_holin_3_6 nSTAND_NTPase5
Other DBs
NCBI-ProteinID: QDC10313
LinkDB
Position
complement(2806390..2809986)
AA seq 1198 aa
MKRWIIGILVVLSLLLWFAVVWFALPLVGFGEATPFEPVWVRILMIAVVWLTVGTVYLIK
FIRRRRAAKALEDALTEQEVTGDGEVLGEKMGEAMEVLKKSSGSKSFLYDLPWYIIIGPP
GSGKTTALLNSGVKFPLAEKGEGAVAGVGGTRYCDWWFSEEAVLIDTAGRYTTQDSDAEA
DQKSWASFLKLLKTYRANQPINGVMLAISLQELMTASPAEIEAHAEIIRARLNEINDELR
VDFPVYVMFTKADLISGFMEFFNSFSQSRRQKVWGHTFQTESKKEQTVERFDEEYDALVN
RLSEEVTDRLQEEPDGINRIAIFSFPGQVAMLRDRLGDFMRGVFGHTRYKVAANLRGFYF
TSGTQEGTPIDQVLGAMQRNFGGMAQGQMSGKAKSFFLHDLLKKVIFAEAGWVSTDKRAV
RRAAIWRYSTITLIVLATMGMLGLWGLSFYQNRQLIDTAEAAISNYELQARDEIGSGKVE
DIDLLTVLPHLEMLRNMPMGYADTETEAPLSEKFGLSQRGSVRSAATVTYRQALERMFRS
RLILQLEQQLENFIRTGEVLAVYKTLKVYKLLGNLAPQSDDELVIGFFRDDWRRNTYAGT
NPETRAALESHLVAMLELDAAQQPSFELNGALIDQGERLLARMNVEDQAYSLILATAEFA
GIEPFTIAGRGGRDADLVFESVDGRALDDLVISPLYTYAGFHEFFLPQLSQIAENLLEDQ
WVMGEYAADAQIEDQIQGLGPILLKRYTNDWIEEWDRVLGLVKLRPMSADRPSYQALAAA
SAPRTSPILLLTTEIMEETSLTAEYNKGADEPPAGMDPDAAAGKAAEAGGEFGKRAAQIF
INRQSGLARIGLDVAFRKSQDRASSSGGGGGQTRLPGAEIEAYYADWHDLLIGDPPQRRI
DFLIQTLGDMQRTLITAVDFPEVADRELPAKLGALKQASSRLPKPMERMIQEAVDDFEGD
AANTSVARLNELLNQQVTQVCQAAIDSKFPFAKNSAREVGLVDFARLFAPQGVIDRFFLE
NLSQFADTSGGNWTWKDTGPLAGKLSTSTLKQFERAAEIRDAFFPTGGGIPQIDMEVSPT
SLHGAVETAQLTINGQVILTRKKGNTPANVTWPGSMAGANVELVFTPDMRGRKSNMSEGG
SWAFVKFLNAGRPKVSGNVIAVRYTIDGRHIAYKITLASAVNPFFMNELTEFKCPTGL
NT seq 3597 nt   +upstreamnt  +downstreamnt
atgaaacgctggatcatcggaattctggtcgtgctgtccttgctgctgtggttcgcggtg
gtctggtttgcgctgccactggtgggctttggcgaggcgacgccgtttgagccggtctgg
gtccgcatcctgatgattgccgtggtctggctcacggtgggcaccgtctatctcatcaag
ttcatccgccgccgccgggccgccaaggcgctggaagacgcgctgaccgagcaggaagtg
accggcgatggtgaggtgctgggcgagaagatgggcgaggcgatggaggtgctgaaaaag
tccagcggctccaagagctttctctacgatctgccgtggtacatcatcatcggcccgccc
ggctcgggcaaaacaacggcgctgctgaactccggcgtgaagtttccgctcgccgaaaag
ggcgagggggccgtggccggggtagggggcacgcgctattgcgactggtggttctccgaa
gaggcggtgctgatcgacacggcgggccgctacaccacgcaagacagcgacgccgaggcc
gaccagaaaagctgggccagtttcctcaagctgctcaagacatatcgcgccaatcagccg
atcaacggcgtcatgctggcgatctccctgcaagagctgatgacggcgagcccggcagag
atcgaggcccatgccgaaatcatccgcgcccgcctcaatgagatcaacgacgagctgcgg
gtggatttcccggtctatgtgatgttcaccaaggccgatctgatcagcggcttcatggag
ttcttcaactccttctcgcagagccgccgccagaaggtttggggccataccttccagacc
gagagcaagaaggaacaaaccgtcgagcgcttcgacgaggagtatgacgcgctggtcaac
cggctctccgaagaggtgacggaccggctgcaggaagagcccgacgggatcaaccgcatt
gccatcttctccttccccgggcaggtcgccatgctgcgcgaccgtctgggcgatttcatg
cgcggggtcttcgggcacacgcgttacaaggtggcggccaacctgcgcggcttctacttt
acctccggcacccaggaaggcaccccgatcgaccaggtgctgggcgcgatgcagcgcaac
tttggcggcatggcgcaaggccagatgtctggcaaggcgaagagcttcttcctgcatgac
ctgctgaagaaggtgatcttcgccgaagccggatgggtgagcaccgacaagcgcgccgtg
cgccgcgccgcgatctggcgctactcgaccattaccctcatcgtgctggccaccatgggc
atgctcgggctctggggcctgagtttttatcagaaccgccagctgatcgacaccgcagag
gcggcgatttccaactacgagcttcaggcccgcgacgagatcggctctggcaaggtcgaa
gatatcgacctgctcaccgtgctgccgcacctcgaaatgctgcgcaacatgccgatgggc
tatgccgacaccgagaccgaagcgccgctcagcgagaagttcggcctcagccagcgcggt
tcggtgcgctctgcggccaccgtcacctaccggcaggcgctggagcggatgttccgctcg
cggctgatcctgcaacttgagcaacagctcgaaaacttcattcgcaccggtgaggtgctg
gccgtctacaagacgctgaaggtgtacaaactgctgggcaacctcgcgccgcagagcgat
gacgagctggtcatcggcttcttccgcgacgactggcggcgcaacacctatgcgggcacc
aaccccgagacccgcgccgctctggaaagccatctggtggccatgctggagctggacgcc
gcgcagcagccgagctttgagctgaatggggcgctgattgatcagggcgagcggttgctg
gcgcggatgaacgtggaagatcaggcctacagcctcatcctcgccaccgccgagtttgcc
gggatcgagccattcaccatcgcaggccggggcgggcgcgatgctgacctcgtgtttgaa
agcgtcgacgggcgggcgctggatgatctggtgatttcgccgctctacacctatgcgggc
ttccacgagttcttcctgccccagctcagccagattgccgagaacctgctggaggaccag
tgggtgatgggcgaatacgccgccgatgcgcagatcgaagaccagatccagggcctcggg
ccgatcctgctgaagcgctacaccaacgattggatcgaggagtgggacagggtgcttggc
ctcgtcaagctgcgcccgatgagcgccgacaggccctcctatcaggcgctggcggcagcc
tcggccccgcgcacttcgccgattttgctgctgaccaccgagatcatggaagagacctcg
ctgacggcggaatacaacaagggcgccgacgagccgcccgccgggatggacccggacgcc
gcagccgggaaggccgccgaagcgggcggcgagtttggcaagcgggccgcgcagatcttt
atcaaccgtcagtccggccttgcccggatcggcctcgacgtggccttccgcaagagtcag
gatcgggcgtcctcctccggtggcggcggcggccagacccgcctgccgggggccgagatc
gaggcctattacgccgattggcatgacctgctgatcggtgacccgccgcaacgccggatc
gacttcttgatccagacattgggcgacatgcagcgcacgctgatcaccgccgtggacttc
cccgaggtggccgaccgcgaactgcccgccaagctgggcgcgctgaagcaggccagctcg
cgtttgcccaagccgatggagcggatgattcaggaggcggtggacgattttgagggcgat
gccgccaatacctcggtcgcccggctcaacgagttgctgaaccagcaggtgacgcaggtg
tgccaggccgcgatcgacagcaagttcccgtttgccaagaacagcgcgcgcgaggttggc
cttgtcgactttgcccgcctcttcgcgccgcagggcgtgatcgaccgtttcttcctcgaa
aacctcagccagttcgccgacacgagcggcggcaactggacgtggaaagataccggcccg
ctggctggcaagctttcgacctcgacgctcaagcaatttgagcgggcggcagagatccgc
gatgccttcttcccgacgggcgggggcattccgcagatcgacatggaagtttcgcccacc
tcgctgcacggcgcggtggagacggcgcagctcaccatcaacggtcaggtcatcctcacc
cgcaagaagggcaacacgcccgccaatgtgacctggccgggcagcatggccggggccaat
gtagagctggtcttcacgccagatatgcgcgggcgcaagtcgaacatgagcgagggcgga
agctgggctttcgtgaagttcctcaatgccgggcggcccaaggtttcgggcaatgtgatc
gccgtgcgctacacgatcgacgggcgccacatcgcctacaagatcacgctcgcctccgcc
gtgaaccccttcttcatgaacgaactcaccgagttcaaatgcccgactgggctctga

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