Oceanicola sp. D3: FHY55_14315
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Entry
FHY55_14315 CDS
T06139
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ocd
Oceanicola sp. D3
Pathway
ocd03420
Nucleotide excision repair
ocd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FHY55_14315
03430 Mismatch repair
FHY55_14315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocd03400
]
FHY55_14315
Enzymes [BR:
ocd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FHY55_14315
DNA repair and recombination proteins [BR:
ocd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FHY55_14315
MMR (mismatch excision repair)
Other MMR factors
FHY55_14315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QDC10349
UniProt:
A0A5B8C0U9
LinkDB
All DBs
Position
complement(2870386..2872761)
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AA seq
791 aa
AA seq
DB search
MSSPQQEQALSLSQQAVAARPAPYLDGLNPAQREAVEQLDGPVLMLAGAGTGKTKALTTR
IAHLLLTQRARPNEILAVTFTNKAAREMKNRVAGLMGQAVEGMPWLGTFHAICVKLLRRH
AELAGLKSNFTILDTDDQLRLLKQLVAAAGIDDKRWPARMLAGIIDQWKNRALTPDKVPA
ADAGAYDHKGVAIYREYQNRLKTLNAVDFGDLLLHMVTIFQEHEDVLAQYQRWFRYILVD
EYQDTNVAQYLWLRLLAQGHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGAHVVRLE
QNYRSTPHILGAAGGVIAANKGRLGKELWTEAEEGEKVRLIGHWDGEEEARWIGDELEAM
QGGTRGMRPIGLNECAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERMEIRDAMAYF
RVAVSPDDDLAFERIVNTPKRGLGEKAIQKMQRAARANGVSLFEGARILVASGELTGKAK
GQLGALLEGFGRWHGGALNEDDHIELAEQILEESGYTDMWQNDKTPEAPGRLENLKELVK
ALESFENLQGFLEHVALIMDNESEDDGPKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQR
SMDESGVKGLEEERRLAYVGITRAEELCTISFAGNRRIYGQWQSALPSRFIDELPGEHVE
VLTPPGLYGGGYGAAAGPGMGGGSGGEIRSTLHEDAARADGYKSPGWKRLQARAQVRGMS
QPKESRNMVIDAEAVSSHSVGERVFHQKFGYGAITGIEGDKLEIAFEKAGVKKVVAKFVV
PASSAADDIPF
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtccgcaacaagaacaggccctgtcgctctcgcagcaggcggtggccgcccga
cccgcgccctatcttgatgggctgaatcccgcacagcgtgaggcggtggagcagcttgac
gggccggtgctgatgcttgcgggcgcgggcaccggcaagacgaaggcgctgaccacgcgg
atcgcgcacctgttgctgacccagcgcgcgcggcccaatgaaattctcgcggtgaccttc
accaacaaggccgcacgagaaatgaaaaatcgcgtggccgggttgatggggcaggcggtg
gaggggatgccgtggttgggcaccttccacgcgatctgcgtgaagctgctacgccgccat
gccgaattggccgggctgaagagcaacttcaccatccttgataccgatgaccagttaagg
cttcttaaacagctcgtcgccgctgcgggtatcgacgacaagcgctggcccgcgcggatg
cttgccgggatcatcgaccagtggaagaaccgggccctcacacccgacaaggtgcccgcc
gccgatgccggggcctatgaccacaagggcgtggcgatctaccgtgagtatcagaacagg
ttgaagacgctgaacgcggtcgattttggcgacctgctgctgcacatggtcacgatcttc
caagagcatgaggatgtgctggcgcagtatcagcgctggtttcgctacattcttgtggac
gagtatcaggacaccaacgtggcccaatatctgtggctgcggctgctggcgcaggggcac
aagaacatttgctgcgtgggcgacgacgaccagtcgatttatggctggcggggcgctgaa
gtgggcaacatcctgcggtttgaaaaggattttcccggcgcgcatgtggtgcggctggag
cagaactatcgttcgacgccgcatattctgggcgctgccgggggcgtgattgccgccaac
aaggggcggctgggcaaggagctgtggaccgaggccgaagagggcgagaaggtgcgcctc
atcggccattgggacggcgaggaagaggctcgctggatcggcgatgagctggaggcgatg
cagggcggcacgcggggaatgcggcctatcgggttgaacgaatgtgcaattttggtgcgt
gccagccaccagatgcgggcgtttgaagaccggtttctgaccatcggcttgccctaccgg
gtgatcggggggccgcggttttatgagcggatggagatccgcgatgcgatggcctacttc
cgcgtggccgtcagtccggacgatgatttggcgtttgaacggatcgtcaatacgcccaag
cggggcttgggcgaaaaggcgattcagaagatgcagcgggcggcgcgggcgaacggggtt
tcgctgtttgaaggcgcgcggattctggtggcctctggcgagctgacgggcaaggccaag
gggcaactcggggcgctgctggaagggtttggccggtggcatggcggggcgttgaacgag
gacgaccacatcgagctggccgagcagattcttgaagaatccggctacaccgacatgtgg
caaaacgacaaaacgcccgaggcgccggggcggctggagaacctgaaggaactggtgaag
gcgctggaatcctttgagaatctgcaagggtttctggagcacgtcgcgctgatcatggac
aatgagagcgaggatgacgggcccaaggtttctatcatgacgctgcatgcggcgaagggg
ctggagtttcccgccgtgttcttgccgggctgggaagacgggctgtttccgagccagcgc
agcatggatgagagcggggtgaaggggctcgaggaggagcggcggctggcctatgtgggg
atcacccgggccgaggagctttgcacgatttcctttgcgggcaaccggcggatttatggc
cagtggcaaagcgccctgccgagccggtttatcgacgaactgccgggcgagcatgtggaa
gtgctgacgcctccggggctctacggtggcggctatggcgcggcggccgggccgggcatg
ggcggcggcagcggcggcgaaattcgctcgactttacacgaggatgcggcgcgggcggat
ggctataagtcgccgggctggaagcggcttcaggcgcgggcgcaggtgcgtgggatgagc
cagccgaaggagagccggaacatggtgatcgacgctgaggcggtgtcatcgcacagcgtg
ggggagcgggtgtttcaccagaaattcggctatggcgcgattaccggaatcgagggcgac
aagcttgaaatcgcttttgaaaaagcgggcgtgaagaaggttgtggccaagttcgtggtg
cctgcgtcgagcgcggcggatgatattccgttctag
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