Oceanicola sp. D3: FHY55_17670
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Entry
FHY55_17670 CDS
T06139
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ocd
Oceanicola sp. D3
Pathway
ocd03030
DNA replication
ocd03410
Base excision repair
ocd03420
Nucleotide excision repair
ocd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FHY55_17670 (polA)
03410 Base excision repair
FHY55_17670 (polA)
03420 Nucleotide excision repair
FHY55_17670 (polA)
03440 Homologous recombination
FHY55_17670 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocd03032
]
FHY55_17670 (polA)
03400 DNA repair and recombination proteins [BR:
ocd03400
]
FHY55_17670 (polA)
Enzymes [BR:
ocd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FHY55_17670 (polA)
DNA replication proteins [BR:
ocd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FHY55_17670 (polA)
DNA repair and recombination proteins [BR:
ocd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
FHY55_17670 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FHY55_17670 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QDC10949
LinkDB
All DBs
Position
complement(3536919..3539744)
Genome browser
AA seq
941 aa
AA seq
DB search
MAFGKGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHKYIEANTGPDAP
THAAVIFDYSGKSFRNEIYDKYKANRPPAPEDLVPQFPLTREATRAFNVACEEIEGYEAD
DIIATLSCQAREAGGRVTIISSDKDLMQLVGGGVEMLDAMKNKRIDVDGVIEKFGVKPER
VVDVQALAGDSTDNVPGAPGIGIKTAALLINEYGDLDTLLERAGEIKQPKRRESLQDNAE
LIRISQRLVQLDCNTPLDFTLDDLEVKDPDPEALLAFLAEMEFRTLAKRVAEQFGTEAPV
IGDTPGTSGGSDGAEASDMPDPTASEIPFDHAKYEHVSTREQLDDWLMRVASAGHVAVDT
ETTGLNEMTADLVGISLSVPPGEACYIPLAHVKGSGDDLFADETPAEGQLPLNEALDALK
PMLEDPAILKIGQNIKYDAKIFTRYGVKVAPFDDTMLLSYAMHGGLHGHGMDALSERYLG
HNPIPIKELIGTGKSAITFDKVPLEEAVKYAAEDADITLRLWQVFKPRLHRAKVTTVYET
LERPLVPVLAEMEMHGVKVDRDTLSRMSNAFAQKMAGLEAEIHELAGESFNVGSPAQLGD
ILFEKMGLEGGKKGKTGKYSTPADVLEDLATEHDLPARVLDWRQLSKLKSTYTDALQTHI
NAETGRVHTSYAITGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEKGNKLVSLDYSQ
IELRILAHIANIEELKQAFREGQDIHALTASEMFNVPLDEMTPDIRRQAKAINFGVIYGI
SGFGLARNLRIPRAEAQAFIDRYFERFPGIRAYMDSTIAFAKEHGHVQTLFGRKIHTPEI
NAKGPGAGFAKRAAINAPIQGTAADVIRRAMVRMPEAIEGLPAKMLLQVHDELIFEVEEA
AIDDTIAVVKKVMEGAAAPAVHLDVPLEVDAGQGDSWAEAH
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggcattcggcaaaggctgccaccttcacctgatcgacggctcggccttcatcttccgc
gcctatcacgcgctgccgccgctcacccgcaaatccgacgggctgcccatcggtgcggtc
gcgggcttctgcaacatgctgcacaagtatatcgaggccaacaccgggcccgatgccccc
acccatgctgccgtgatcttcgactattccggcaagagctttcgcaacgagatctacgac
aagtacaaggccaaccgcccgcccgcgccggaagaccttgtgccgcagttcccgctcacc
cgcgaggccacccgcgccttcaacgtcgcctgcgaagagatcgagggctacgaggccgat
gacatcatcgccaccctctcctgtcaggcccgcgaggcaggcgggcgcgtgacgatcatc
agctccgacaaagacctgatgcagctggtcggcggcggggtggaaatgctcgacgcgatg
aaaaacaaacgcatcgacgtggacggggtgatcgagaagttcggcgtgaagcccgagcgc
gtggtcgacgtgcaagcgctggccggcgattccaccgacaacgtgcccggtgcgcccggc
atcggcatcaaaaccgccgcgctgctcatcaacgagtatggcgacctcgacacgctgctg
gagcgtgccggcgagatcaagcagcccaagcgccgcgagagcctgcaagacaacgccgag
ctcatccgcatctctcagcgcctcgtccagctcgactgcaacaccccgctggatttcacc
ctcgatgaccttgaggtgaaagacccggacccggaagcgctgctcgccttcctcgcagag
atggagtttcgcacgctggccaagcgcgtggccgagcagtttggcacagaggccccggtg
atcggcgacacgcccggcacctccggcggctctgacggcgccgaagcctccgacatgccg
gacccgacggcgagcgagatcccctttgatcacgccaaatacgagcatgtctccacccgc
gagcagcttgacgactggctcatgcgcgtggccagcgcgggccatgtggcggtggatacc
gaaaccaccggcctcaacgagatgacagccgatctggtgggcatatcgctctccgtcccc
cccggcgaggcctgctatattccgctggcccacgtgaagggcagcggcgatgaccttttc
gccgatgaaacccccgccgagggccaattgccgctgaacgaggcgctcgatgccctcaag
ccgatgctggaagatccggcgatcctgaagatcggccagaacatcaagtatgacgccaag
atcttcacccgctacggcgtgaaggtggcccccttcgatgacaccatgctgctcagctac
gccatgcacggcggcttgcacggccacgggatggatgcgctctccgagcgctacctcggc
cacaaccctatcccgatcaaggagctgatcggcactggcaaatccgcgatcaccttcgac
aaggtgccactggaagaggcggtgaaatacgccgccgaggatgccgacatcaccctgcgc
ctctggcaggtcttcaagcctcgcctgcaccgcgccaaggtgacgacggtgtatgaaacg
ctggaacgtccgctggtgccggtgctggccgaaatggaaatgcacggcgtaaaggtggac
cgcgacacgctctcccgcatgtccaacgccttcgcccagaagatggccgggctggaggcc
gagattcacgaactcgccggagaaagcttcaacgtcggctcccccgcccagcttggcgat
atcctcttcgagaagatggggctggaaggcggcaaaaagggcaagaccggcaaatacagc
accccggcggatgtgctggaagacctggcgactgagcatgacctgcccgcgcgggtgctc
gactggcggcaactctccaagctcaaaagcacctacacagacgcgctgcaaacccacatc
aatgccgagacgggccgggtacacaccagctacgccatcaccggcgccaacaccgggcgg
ctggcctcgaccgacccgaacctgcaaaacatccccgtgcgcagtgaagagggccgccgc
atccgcgaggccttcgtggccgagaagggcaacaagctggtcagcctcgattattcccag
atcgagctgcgcatcctagcccatatcgccaacatcgaagagctgaagcaggccttccgc
gaggggcaggacattcacgcgctcaccgcgtccgaaatgttcaacgtcccgctcgatgag
atgacgcccgacatccgccgccaggccaaggcgatcaacttcggcgtcatttacgggatc
tccggcttcggccttgcccgcaacctgcgcatcccccgcgccgaggcgcaggccttcatc
gaccgctacttcgagcgcttccccggcatccgcgcctatatggacagcacgattgccttc
gccaaggagcacggccacgtgcaaaccctctttggtcgcaagatccacacgccggagatc
aacgccaagggccccggcgcgggctttgccaaacgcgcggcgatcaacgcgcccattcag
ggcaccgccgccgatgtgatccgccgcgcgatggtgcggatgcccgaggcaattgagggg
ctgcccgccaagatgctgctgcaagtccacgacgaactcatcttcgaagtcgaagaggcg
gccatcgacgacaccatcgccgtggtgaaaaaggtcatggaaggcgccgccgccccggcg
gtgcacctcgacgtgccgctggaggtggatgccgggcagggcgacagctgggccgaagcg
cattga
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