Oceanimonas sp. GK1: GU3_00755
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Entry
GU3_00755 CDS
T01667
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
oce
Oceanimonas sp. GK1
Pathway
oce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GU3_00755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oce03019
]
GU3_00755
Enzymes [BR:
oce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GU3_00755
Messenger RNA biogenesis [BR:
oce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GU3_00755
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AEX99907
LinkDB
All DBs
Position
159216..160520
Genome browser
AA seq
434 aa
AA seq
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MSKTHLTETKFAQLGLQPQVLAGLEAKGFHHCTPIQALSLPPLLAGKDIAGQAQTGTGKT
IAFLAATFNHLLTTPAPANRNTNQPRAIIMAPTRELAVQIHNDADTLSASTGLKLGLAYG
GEGYEKQVEVLDAGVDILIGTTGRIIDFFKQKVISLDAIQVVVLDEADRMFDLGFIKDIR
FLFRRMPPASQRQNMLFSATLSLRVQELAYEHMNSPEHVEVEPEQKTGVRIQEELFYPAQ
EEKMLLLLTLVEEEWPDKAIVFANTKHSCEEVYAWLKADHHRVGLLTGDVPQKKRLKILE
DFTSGALDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGASGHSISFA
CEEYVFNLPAVEAYIEHEIPVSKYDRDALLTDVTPPRHIHHHRAAVNRNVRDRQGGNRRP
PSGNRRRRPQGSRS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacaccttaccgaaacaaaattcgcccagttgggcctgcagccgcaagtg
ctggccggactggaagccaagggatttcaccactgcacgccgatacaggcgctgtcgtta
ccgcccctgctggcaggcaaggacattgccgggcaagcccagaccggcaccggcaaaacc
atcgcctttctcgccgccacctttaaccatctgctgaccacccccgctcccgccaaccgc
aacaccaaccagccccgtgccatcatcatggccccgacccgggaactggcggtacagatc
cataacgacgccgataccctgagcgccagtaccggcctcaagctgggcctggcctatggc
ggcgaaggttatgaaaagcaggtggaggtgctagacgccggcgtcgatattctgatcggc
accaccggccgcatcatcgatttcttcaagcagaaggtgatcagcctcgacgccattcag
gtagtggtactggatgaagcggatcgcatgtttgatctgggctttatcaaggacatccgc
tttctgttccgtcgcatgccgccggccagccagcgtcagaacatgctgttctccgcgacc
ctgtcactcagggtacaggagctggcctacgagcacatgaacagccccgagcatgttgaa
gtggagccggagcagaaaaccggcgtccgcattcaggaagagctgttctatccggcccag
gaagaaaaaatgctgctgctgctcaccctcgtggaagaagagtggcccgacaaggccatc
gtctttgccaacaccaagcacagctgcgaggaagtctacgcctggctgaaggccgaccac
cacagagtgggcctgctgaccggtgatgtgccccagaaaaagcggctcaagatcctggaa
gacttcaccagtggcgccctcgacattctggtggccaccgacgtggccgcccgcggcctg
cacattcccgacgtcacccacgtgttcaactacgatctgcccgacgacgccgaagactac
gtgcaccgcatcggccgcaccggccgggccggcgccagcgggcactccatcagctttgcc
tgcgaagagtacgtgttcaacctgccggcggtggaagcctatatcgagcatgaaattccg
gtgagcaagtacgaccgcgacgccctgctgaccgacgtgacgccgccccggcacattcat
catcaccgggccgcagtgaaccgtaacgtacgggatcgccagggtggcaaccggcgtcct
ccctccggtaatcgtcgccgccgtccccagggcagccggagctga
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