Oceanimonas sp. GK1: GU3_00830
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Entry
GU3_00830 CDS
T01667
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
oce
Oceanimonas sp. GK1
Pathway
oce03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GU3_00830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oce03021
]
GU3_00830
03400 DNA repair and recombination proteins [BR:
oce03400
]
GU3_00830
Enzymes [BR:
oce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GU3_00830
Transcription machinery [BR:
oce03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GU3_00830
DNA repair and recombination proteins [BR:
oce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GU3_00830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AEX99922
UniProt:
H2FZZ6
LinkDB
All DBs
Position
complement(177494..178483)
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTDFLKPRLVDIEQVSQTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAITEVE
LDGVLHEYSSKEGIQEDILEILLNLKEVAIKLEGKDEVTLSLTKTGAGPVTAGDITHGDD
VEIVNPEHVICHLTGDDADISMRLKVQRGRGYVPASARAHTEDDERPIGRLLLDAAYSPV
VRIAYNVEAARVEQRTDLDKLVIDMETNGTLDPEEAIRRAATIMAEQLEAFVDLRDVSEP
EEKEDKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaacagattttcttaagccgcgtctggttgatattgaacaagtcagc
cagactcatgccaaagtgactctcgagccgctggagcgtggctttggtcatacattgggt
aatgcgctgcgtcgtattctgctttcttccatgccgggctgtgccatcaccgaagttgaa
ctcgacggtgtactgcacgagtacagcagcaaggaaggtatccaggaagatattctggaa
atcctgctcaacctcaaagaggttgctatcaagctggaaggcaaggacgaagttaccctg
tcactgaccaaaactggtgcaggtcccgtaactgcaggcgacatcacccatggtgatgac
gtcgagatcgttaacccagagcacgtcatctgtcatctgacaggggacgacgccgacatc
agcatgcgtcttaaggtgcagcgtggccggggctatgtacctgcctccgcccgtgcccac
accgaagacgacgagcgtccgattggccgcctgctgctggatgcggcgtacagccccgtg
gttcgtatcgcctacaatgtagaggcggcccgtgttgaacagcgtaccgacctggacaag
ctggttatcgacatggagaccaacggcaccctggatccggaagaagccatccgccgcgcg
gccactatcatggccgaacagctggaagccttcgtggatctgcgtgacgtcagcgagccg
gaagagaaagaagacaagcctgagttcgatcctatcctgctgcgtcctgtcgacgatctg
gaactgacagttcgttctgcgaactgtctgaaggcagaagcgatccattacattggtgat
ctggtacagcgtaccgaggtggagctgctgaagactcccaacctgggtaaaaagtctctt
accgagattaaagacgtgttggcgtctcgtggtttgtctctgggcatgcgcctggagaac
tggccgcctgccagcatcgctgatgaataa
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