Oceanimonas sp. GK1: GU3_01700
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Entry
GU3_01700 CDS
T01667
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
oce
Oceanimonas sp. GK1
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oce03016
]
GU3_01700
Enzymes [BR:
oce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GU3_01700
Transfer RNA biogenesis [BR:
oce03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GU3_01700
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AEY00097
UniProt:
H2FYT2
LinkDB
All DBs
Position
342074..344053
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AA seq
659 aa
AA seq
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MFQDNPLLAQLKQQIRDTLPTKEGMVKGTSKGFGFLEVSDKESYFIPPPHMKKVMHGDRI
TAVLRTENDKELVEPETLLEPGLTRFVARVKWFRDRLNIVPDHPLMKDAIKARTGKGLDE
KNLKEGDWVLADLKRHALKDNGFFAEVVELIAAVDDPIAPWWVVLARNSLANQAPQDREQ
WELLEETLPRQNLTEVPFFTIDSESTQDMDDALSVKKRDNGGWELLVAIADPTAYVAHDS
ELDSIAAKRAFTVYLPGRNIPMLPRTLADELCSLKEGEDRHALCARIHIDADGKVADDAE
FFAARIRSHARLAYDKVSDWVEGTGDWQPASEVIAEQLRELTAFTRARNTWRSTHAIVFP
DRPDFRFELDDASNVVAIHADHRRIANQMVEESMIAANLACGNWLTKHCGTGVFNVHAGF
DEEKLAQLQELLQEHGAPVDPERLTTLEGFCELRRWLDARDTSYLDNRVRRFQSFAAMSV
TPGEHYGLGLDAYATWTSPIRKYGDIINHRLIKAILAEKAHDAHAPNAELAVHLSEQRRM
HRRAERDIADWLYVRYLQPAVASGHPFDAEIIDIGRGGVKLRLQENGAVVFMPSSLILAN
RDRLECSWDDGRVYLDKQPVYELGQHIQVILTEAIEDTRSLIAKPAIPLVPEKQEKPAS
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaaccccctgctggcccagctcaagcaacaaatccgcgacacccttccc
accaaggaaggcatggtcaaaggcacctccaagggcttcggctttctcgaagtcagcgac
aaggaaagctacttcattccgccgccccacatgaaaaaggtgatgcacggcgatcgcatc
accgccgtgctgcgcaccgaaaacgacaaggagttggtggagcccgaaaccctgcttgag
cccggtctgacccgctttgtggccagggtaaagtggttccgtgaccggctcaatattgtg
ccggatcacccgctgatgaaagacgccatcaaggcccgcaccggcaaggggctggacgag
aagaacctgaaggaaggcgactgggtactggcggatctcaagcgccacgccctgaaagac
aacggctttttcgccgaagtggtggagctgattgccgcggtggacgatcccatcgccccc
tggtgggtggtgctggcccgcaacagcctggccaaccaggcgccccaggatcgggaacag
tgggagctgctggaagagaccctgccccgccagaacctgaccgaagtgccctttttcacc
atcgacagcgagtccacccaggacatggacgacgccctaagcgtgaaaaaacgggataac
ggcggctgggagctgctggtggccattgccgatcctaccgcctatgtggcccacgacagc
gagctggacagcatcgccgccaagcgcgcctttaccgtctacctgccgggccgcaacatt
cccatgctgccgcgcaccctggccgacgagctgtgctccctgaaggaaggcgaagaccgc
cacgccctgtgcgcccgcattcatatcgatgccgatggcaaggtcgccgacgacgccgag
ttttttgccgcccgcattcgctcccacgcccgcctggcctacgacaaggtctccgactgg
gtagaaggcaccggcgactggcagcccgcaagcgaggtaatcgccgagcagctgcgcgag
ctgaccgccttcacccgcgcccgcaacacctggcgcagcacccacgccatcgtgtttccg
gaccgtcccgacttccgctttgaactggacgacgccagcaacgtggtggccattcatgcc
gatcaccgccgcatcgccaaccagatggtggaagagtcgatgatcgccgccaacctggcc
tgcggcaactggctgaccaaacactgcggcaccggcgtgttcaacgtgcatgccggcttt
gacgaagagaagctggcccagctgcaggaactgctgcaggagcacggcgccccggtagac
ccggagcggctgaccaccctggaaggcttctgcgagctgcgccgctggctggacgcccgc
gacaccagctacctggacaaccgagtgcgccgcttccagtccttcgccgccatgagcgtg
actccgggcgagcactacggcctgggcctggacgcctacgccacctggacctcgcccatt
cgtaaatacggcgacatcatcaaccaccgcctgatcaaggccattctggccgagaaggcc
cacgacgcccacgcccccaatgccgagctggcggtacacctgtccgagcagcgccgcatg
caccgccgtgccgagcgcgacatcgccgactggctgtatgtgcgctacctgcaaccggcg
gtggccagcggccacccctttgacgccgagatcatcgacatcggccggggcggcgtgaaa
ctgcgcctgcaggaaaacggcgccgtggtgtttatgccgtcttccctgatcctggccaac
cgggaccggctggaatgcagctgggacgacggccgggtctacctcgacaaacagccggtg
tacgagctgggtcagcacattcaggtgatcctgaccgaagccattgaagacacccgctcg
ctcatcgccaagccggccattccgctggtaccggagaagcaggaaaagcccgcttcctga
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