Oceanimonas sp. GK1: GU3_02470
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Entry
GU3_02470 CDS
T01667
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oce
Oceanimonas sp. GK1
Pathway
oce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GU3_02470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oce03019
]
GU3_02470
03400 DNA repair and recombination proteins [BR:
oce03400
]
GU3_02470
Enzymes [BR:
oce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GU3_02470
Messenger RNA biogenesis [BR:
oce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GU3_02470
DNA repair and recombination proteins [BR:
oce03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GU3_02470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
zf-CXXC
DUF3304
Motif
Other DBs
NCBI-ProteinID:
AEY00251
UniProt:
H2G110
LinkDB
All DBs
Position
524353..526179
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AA seq
608 aa
AA seq
DB search
MNPETDDIASVPIPDTPHGVLQQVFGYQDFRDGQLEIVEAAVAGRDAMVIMPTGGGKSLC
YQIPALLRPGLTVVVSPLISLMKDQVDTLVANGVAAAYINSSLSRDTMLRHFTALRRGEI
KLLYVSPERLLQHEFMERLGELELGLFAIDEAHCISQWGHDFRPEYAELGRLKQWFPHIP
VMALTATADEATRQDMLGRLNLTAPLIHIASFDRPNIRYTLVEKFKGLDQLVRYVAEQNG
QCGIVYCSSRKRVEEVAERLLAKGHRAASYHAGLPLELRQSVQERFIRDDLDIVVATVAF
GMGIDKPNVRYVVHYDIPKNIESYYQETGRGGRDGLPSEALLLYDPGDVGRVRRLLENSD
NEQQLQVELYKLNVMAAFAESLTCRRQVLLNYFGEYQREPCGNCDICLDPPKRYDGTEDA
QKALSCVYRTGQRFGVLYVVEVLRGADTQRVREHGHDKLSTYGIGKDKSQEHWVSVLRQL
IHSGLLTQNITRNMVLQLTEAARPVLRGDVALELAEPRLVRVKQKDKAESGLTRAEDRAL
FKALRQLRKQLAEEADVPPYVVFNDATLTELARYRPKTEAELLGINGVGVRKLERFGEAF
LELLRREG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccgaaaccgacgacatcgcttccgttcccattcccgacactccccatggcgtg
ctgcagcaggtgttcggctatcaggactttcgggatggtcagctggaaatcgtggaagcg
gcggtggccggacgcgatgccatggtgatcatgcccaccggcggcggcaagtcgctgtgc
tatcagatcccggcattgctgcggcccggcctgacggtggtggtgtcgccgctgatctcg
ctgatgaaggatcaagtagacactctggtggccaacggtgtggcggcggcctacatcaac
agctccctcagccgggacaccatgctgcgtcatttcaccgccctgcgccggggcgagatc
aagctgctctatgtgtcgccggagcggctgctgcagcacgagttcatggagcggctgggg
gagctggagttggggctgttcgccatcgacgaggcccactgcatctcccagtggggccat
gattttcgccccgaatacgccgagctgggccggctcaagcagtggtttccccatattccg
gtgatggcgctcaccgccaccgccgacgaggccacccgccaggacatgctgggccggctc
aacctcaccgcgccgctcattcatattgccagtttcgaccggcccaacattcgctacacc
ctggtggaaaagttcaaggggctggatcaactggtgcggtacgtggccgagcagaacggt
cagtgcggcattgtctactgttccagccgcaagcgggtggaagaggtggccgagcggctg
ctggccaaaggccacagggccgccagctaccatgccggcctgcccctggagctgcgccaa
tcggtgcaggagcgctttattcgggacgatctcgacatcgtggtggctacggtggccttt
ggcatgggcatcgacaagcccaatgtgcgctatgtggtgcactacgacattcccaagaac
atcgagtcctactatcaggaaaccggccggggcgggcgtgacggcctgccgtcggaagcg
ctgctgctctacgacccgggcgacgtgggccgggtgcgacggctgctggaaaacagcgac
aacgagcaacagttgcaggtggagctgtacaagctcaacgtgatggcggcctttgccgaa
tccctcacctgccgtcgccaggtgctgctcaactacttcggcgaataccagcgcgagccc
tgcggcaactgcgatatctgtctggatccgcccaagcgttacgacggcaccgaggacgcg
caaaaggcgctgtcctgcgtgtatcgcaccggtcagcgctttggcgtgctgtacgtggtg
gaagtgctgcgcggcgccgacacccagcgggtacgcgagcacggtcatgacaaactctcg
acctacggcatcggcaaagacaaaagccaggagcactgggtgagcgtgctgcgccagctc
attcactccggcctgctgacccagaacattacccgcaacatggtgttgcagctcaccgag
gcggcccggccggtgctgcgcggtgacgtcgccctggagctggccgaaccccggctggtg
cgggtaaagcagaaggacaaggcggaaagcggcctgacccgcgccgaagatcgggccctg
ttcaaggcgctgcggcagttgcgaaaacagctggccgaagaggccgatgtgccgccctat
gtggtgttcaacgacgccaccctcaccgagctggcccgttaccggcccaaaaccgaagcg
gagttgctgggcatcaacggcgtgggggtgcgcaagctggagcgttttggcgaggcgttt
ctggagttgctgcggcgggaaggctga
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