Oceanimonas sp. GK1: GU3_03170
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Entry
GU3_03170 CDS
T01667
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
oce
Oceanimonas sp. GK1
Pathway
oce03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GU3_03170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oce03400
]
GU3_03170
Enzymes [BR:
oce01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GU3_03170
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GU3_03170
DNA repair and recombination proteins [BR:
oce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GU3_03170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AEY00391
UniProt:
H2FY69
LinkDB
All DBs
Position
678543..679355
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVEVSRLGITPHLLGESVMRVVVRNPSLRWPVPAEIQELTGLTLTGIRRRAKYLL
LETDWGTAILHLGMSGNLKVLPHGTPAGKHDHVDIEFANGKLLRLNDPRRFGCLLWTREA
VEQHPLLARLGPEPLTDAFDGDYLYQRSRGRKTAIKQFIMDNQVVVGVGNIYANESLFDA
GIHPQREAGSISRARYLKLAEEIKTVLARAIGQGGTTLKDFTGSDGKPGYFVQELQVYGR
AEQPCVRCGGLLKEVRMNGRSTVFCGRCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccggagttaccagaagtcgaagtcagtcgtttgggcattaccccccacttgctggga
gagtcggtgatgcgggtggtggtgcgtaaccccagtctgcgctggccggtgccggcggag
atccaggagctgaccgggctgaccctgaccggaatccgccgccgggccaagtacctgttg
ctggaaactgactggggcaccgccattctgcacctgggcatgtccggcaacctcaaggtg
ctgcctcacggcaccccggcgggcaagcacgatcatgtagacatcgaatttgccaacggc
aagctgctgcggctgaacgacccccgtcgttttggctgcctgctgtggacacgggaagcc
gtagagcagcacccgctgctggcccggctggggccggagccgctgaccgacgcctttgac
ggcgattacctttaccagcgcagccgaggccgcaagaccgccatcaagcagttcatcatg
gacaatcaggtggtggtgggggtgggcaacatctacgccaacgagtcgctgtttgacgcc
ggcattcaccctcagcgagaagcgggcagcatcagccgggcgcgttatttgaaactggcc
gaggaaatcaaaaccgtgctggcccgggccatcggccagggcggcaccaccctgaaggac
tttaccggcagcgacggcaagccggggtattttgtgcaggagctgcaggtctacggccgg
gcggagcagccttgtgtgcgctgtggcggcctgctgaaggaagtgcgcatgaacggccgc
agcacggtgttttgcggccgctgccagcggtga
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