Oceanimonas sp. GK1: GU3_03710
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Entry
GU3_03710 CDS
T01667
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
oce
Oceanimonas sp. GK1
Pathway
oce03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GU3_03710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oce03021
]
GU3_03710
03400 DNA repair and recombination proteins [BR:
oce03400
]
GU3_03710
Enzymes [BR:
oce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GU3_03710
Transcription machinery [BR:
oce03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GU3_03710
DNA repair and recombination proteins [BR:
oce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GU3_03710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Phage_Gp84
LPD39
Motif
Other DBs
NCBI-ProteinID:
AEY00499
UniProt:
H2FZQ2
LinkDB
All DBs
Position
792860..797071
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLKFLKAQSKTEEFDGIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTSLERGQMLSEEQYLDSLEEWGDEFDAKM
GAEAVLALLRDIDLEGEINTMREELDQTNSETKRKKITKRLKLMEAFHFSGNKPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLESRGLATTIKAAKKMVEREEAIVWDILDDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINAKGEGMLLTSAKEAEKVYRAG
HAELHARVKVRITDFEKQEDGTLVERTAIYDTTIGRAILSLIVPKGMPFEMIDQAMGKKQ
ISRLLNGCYRLLGLKDCVIFADQLMYTGFHYATLSGVSVGINDMVIPDAKKDIIDEAEAE
VTEIQDQFQSGLVTAGERYNKVIDIWASANERVSKAMMENLSKDVVINRDGEEELQDSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIIANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITTDDCGTHEGLWMMPLIEGGDVVEPLRERVL
GRVVAEDVIKPGTEDELLVARNTLLDEKLCDLLESSSVDRVKVRSVITCDNDHGVCAHCY
GRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKHSGTVK
LQNAQTVTNADGKTVIVSRSSELTIIDEMGQTRENHKLPYGALLEQPDGGLVQAGQVVAN
WDPHTHPIITEVAGRVKFIDMIDGVTISRQTDELTGLSSIVVMDVNERPSSGKELRPTVK
LVDDAGKDVFIPDTDLSALYFLPGRAIVSLEDGAQVNVGDAVARIPQESGGTKDITGGLP
RVADLFEARQPKEPAILAEVSGTISFGKETKGKRRLVITPLEGGEAYEEMIPKWRHLNVF
EGEKVEKGEVLADGPESPHDILRLRGISPVANYIVNEVQEVYRLQGVKINDKHIETVVRQ
MLRRAEIMDSGDSDFIEGEQAEVVRIRQANRALEAEGKRTIGYRHVLMGITKASLSTESF
ISAASFQETTRVLTEAAVAGKVDDLRGLKENVIVGRLVPAGTGFAYHQGRQARRQPEQPV
QISADEAEQSLADLLNAAGGTDE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttgcttaagtttttgaaagcgcagagtaagactgaagagtttgacggtatc
aaaatcggtctggcctcgcccgacatgatccgctcttggtcctttggcgaagtcaaaaag
cccgagaccatcaattaccgtaccttcaagccggagcgtgacggccttttctgcgcccgg
atcttcggtccggtcaaggactatgagtgtttgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgtgaaaagtgcggcgtggaagtgacccagaccaaggtgcgccgtgag
cgcatgggtcacatcgagctggccagcccggtggcccacatctggttcctgaaatccctg
ccgagccgcattggcctgctgctggacatgaccctgcgcgatatcgagcgggtgctgtac
tttgaatcctacgtggtgatcgagccgggcatgaccagcctggagcgcggccagatgctg
tctgaagagcagtacctggactcgctggaagagtggggtgacgaattcgacgccaagatg
ggcgccgaggccgtgctggccctgctgcgggacatcgatctggaaggcgagatcaacacc
atgcgcgaggagctggatcagaccaactccgaaaccaagcgcaagaagatcaccaagcgc
ctcaagctgatggaagccttccatttctccggcaacaagcccgagtggatggtcatgaca
gtgctgccggtgctgccgccggacctgcgtccgctggtacccctggacggcggtcgcttt
gcgacctcggatctgaacgatctgtaccgccgggtgatcaaccgcaacaaccgtctcaag
cgcctgctggatctggccgcaccggacatcatcgtgcgcaacgaaaagcgtatgctgcag
gaatccgttgacgccctgctggacaacggtcgtcgtggccgcgccatcaccggctccaac
aagcgcccgctgaagtccctggccgacatgatcaagggtaaacagggtcgtttccgtcag
aacctgctgggtaagcgcgtcgactactccggtcgttccgttatcaccgtgggtccgacc
ctgcgtctgcatcagtgcggtctgcccaagaagatggcgctggagctgttcaagcccttc
atctacggcaagctggaatcccgcggcctggccaccaccatcaaggcggccaagaagatg
gtggaacgcgaagaagccatcgtatgggatatcctggacgacgtgatccgcgaacacccg
gtactgctgaaccgtgcgcccaccctgcaccgtctgggtattcaggcgttcgaaccggta
ctgattgaaggtaaggccattcagctgcaccccctggtgtgtgcggcctacaacgccgac
ttcgacggtgaccagatggcggtccacgtaccgctgaccctggaagcccagctcgaagcc
cgcgcgctgatgatgtccaccaacaacatcctgtctcccgccaacggcgagccgatcatc
gtcccgtcccaggacgtggtactgggtctgtactacatgactcgggatcgcatcaacgcc
aagggcgagggcatgctgctgaccagcgccaaggaagccgaaaaggtgtaccgtgccggt
cacgccgagctgcacgctcgggtcaaggtgcgcatcaccgactttgagaagcaggaagac
ggcaccctggtggaaagaaccgccatttacgacaccaccattggccgcgccattctgagc
ctgatcgtacccaagggcatgccgttcgagatgatcgaccaggccatgggcaagaagcag
atctcccggctgctgaacggttgctaccgcctgctgggtctgaaagactgcgttatcttc
gccgaccagctgatgtacaccggtttccactatgccaccctgtccggcgtgtccgtgggc
atcaacgacatggtgatcccggatgccaagaaggacatcatcgacgaagcggaagccgaa
gtcaccgagattcaggaccagttccagtccggtctggttaccgccggtgagcgttacaac
aaggttatcgacatctgggccagcgccaacgagcgggtgtccaaggcgatgatggaaaac
ctgtcgaaagacgtggtcatcaaccgcgacggcgaagaagagctgcaggactctttcaac
agcatctacatgatggccgactccggcgcccggggtagtgctgcccagatccgtcagttg
gcgggtatgcggggcctgatggccaagccggacggctccatcatcgaaacgccgatcatc
gccaacttccgtgaaggtctgaacgtactgcagtacttcatctcgacccacggtgcccgt
aagggtctggccgataccgccctgaagaccgccaactccggttacctgacccgccgtctg
gtggacgtggcccaggatctggtgatcaccaccgacgactgtggcacccacgaaggtctg
tggatgatgccgctgatcgaaggcggcgacgtggtcgagcccctgcgcgagcgtgtactg
ggccgggtggtggcggaagacgtgattaagcccggtaccgaagacgagctgctggtggcc
cgtaacaccctgctcgacgagaagctgtgtgacctgctggagtccagctccgtggaccgc
gtgaaagtgcgctccgtgatcacctgtgacaacgaccacggcgtctgtgcccactgttac
ggtcgcgatctggcccgtggccacctggtcaatcagggtgaggctgtcggtgttatcgct
gcccagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacattggtggt
gcggcatcgcgggcggcggcggaaagcagcattcaggtcaagcacagcggtaccgtcaag
ctgcagaatgcccagaccgtcaccaacgccgacggcaagaccgtgatcgtgtcccgctct
tccgagctgactatcatcgacgagatgggtcagacccgggaaaaccacaagctgccttac
ggtgccctgctggagcagccggacggtggtctggtgcaggccggccaggtggtggccaac
tgggatccgcacactcaccccatcatcaccgaagtggcgggccgggtgaagttcatcgac
atgatcgatggcgtgaccatcagccgtcagaccgacgaactgaccggtctgtccagcatc
gtggtgatggacgtgaacgagcgtcccagctccggtaaagagctgcgccccaccgtgaaa
ctggtagacgatgccggcaaggacgtgttcattcccgacaccgatctgtctgccctgtac
ttcctgcccggccgcgccattgtgagcctggaagacggtgcccaggtaaacgtgggtgat
gcggtcgcccgtattccccaggaatccggcggtaccaaggacatcaccggtggtctgccg
cgggttgccgacctgttcgaagctcgtcagccgaaagagccggccattctggccgaggtc
tccggcaccatttccttcggcaaggaaaccaagggcaagcgtcgcctggtgatcacgccg
ctggaagggggcgaggcctacgaggaaatgattcccaagtggcgtcacctcaacgtgttt
gaaggtgagaaggtcgagaagggcgaagtactggccgacggtcccgagtcgccgcacgac
attctgcgtctgcgtggcatcagcccggtggcgaactacatcgtcaacgaggtgcaggag
gtttaccgcctgcagggcgttaagatcaacgacaagcacatcgaaaccgtggtgcgtcag
atgctgcgtcgcgccgagatcatggactctggcgactctgacttcattgaaggtgagcag
gccgaagtggtacgtatccgtcaggccaaccgtgccctggaagccgaaggcaagcgtacc
atcggttaccgtcatgtgctgatgggcatcaccaaggcgtccttgagcaccgagtcgttc
atttcggcggcgtccttccaggaaaccacccgagtgctgaccgaagcggccgtggccggc
aaggtcgacgacctgcgtggtctgaaggaaaacgtgatcgtgggtcgtctggtaccggcc
ggtaccggttttgcctaccatcagggccgtcaggcccgtcgtcagccggagcaaccggtg
cagatttccgccgacgaggccgaacagagcctggccgatctgctcaacgctgccggtggc
accgacgaataa
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integrated database retrieval system
