Oceanimonas sp. GK1: GU3_04835
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Entry
GU3_04835 CDS
T01667
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
oce
Oceanimonas sp. GK1
Pathway
oce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GU3_04835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oce03019
]
GU3_04835
03016 Transfer RNA biogenesis [BR:
oce03016
]
GU3_04835
Enzymes [BR:
oce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GU3_04835
Messenger RNA biogenesis [BR:
oce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GU3_04835
Transfer RNA biogenesis [BR:
oce03016
]
Prokaryotic type
tRNA degradation factors
GU3_04835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
CSD
RNase_II_C_S1
TFIIE_beta
Casc1_C
Motif
Other DBs
NCBI-ProteinID:
AEY00724
LinkDB
All DBs
Position
1044999..1047335
Genome browser
AA seq
778 aa
AA seq
DB search
MSQQQDPFQQREAEKYDNPIPSREFILEHLKQRGTPANRDELFAELDLAGEEQEEALRRR
LRAMERDGQLVFTRNKCYALPDKLNLIKGQVIGHRDGFGFVRPEDGGDDLFLAQREMDAV
MHGDYVLVQPLRFDARGRREARLVRVLESRNLDVVGRYFVENGVSYVVPDDTRIAQDILI
PQGETMGARMGQVVVITITQRPTKRMTGIGKVIEVLGETMDPGMEIQIALRSHDIPHVWP
EEVKQQVAKLSEQVPEEAKQGRKDLRELPLVTIDGEDARDFDDAVFCQPKRSGGWRLWVA
IADVSYYVRPNSALDAEAYQRGNSVYFPEQVIPMLPEVLSNGLCSLNPQVDRLCMVAEMT
ISATGKLSGFKFYEAVMNSHARLTYTKVAAILEGDEVLRERYAPLVPHLEELNQLYQAMK
EARHQRGAVEFETEETRFVFNPQRKIERIVPLVRNDAHKIIEECMIMANVAAARFIEKQE
AHALFRVHDKPGEEKLTGFRSFLGELGLELKGGLEPEPADYALLAEQIKDRPDAELIQTM
LLRSMKQAVYQADNMGHFGLALKSYAHFTSPIRRYPDLVLHRAIKAQLAKMHGGERSTTG
GVPYQYDQVAPMGEHCSMTERRADDATRDVADWLKCEYMLDHVGSEFGGTIANVTGFGFF
VRLDEFHIDGLVHISNLQNDYYQFDPARQQLIGENFRRRYRLGDKVKVKVMAVNLDERKI
DFELAEDAPKGDFDGGKGAKNLKSRKRAKPTGGKGGDKGEKGEKSDKPRSRNRSRKRR
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaacagcaagatcctttccaacagcgggaagccgaaaaatacgacaaccccatt
cccagccgggaattcattcttgagcacctcaagcaacgcggcaccccggccaaccgggac
gaactttttgccgagctggatctggccggcgaggagcaggaagaagccctgcgccgccgg
ctgcgcgccatggagcgcgacggccagctggtgtttacccgcaacaaatgttatgccctg
cccgacaagctgaacctgatcaagggccaggtgatcggccaccgggacggctttggcttc
gtgcgcccggaagacggcggcgacgacctttttcttgcccagcgcgagatggatgcggtc
atgcacggcgactacgtgctggtacaacccctgcgctttgacgcccgcggccggcgtgaa
gcccgcctggtacgggtactggaatcccgtaatctggacgtggtgggccgctattttgtg
gaaaacggtgtcagctacgtggttccggatgatactcgcattgcccaggacattctgatc
ccccagggggaaaccatgggcgcgcgcatgggccaggtggtagtgatcaccatcacccag
cggcccaccaagcgcatgaccggcatcggcaaggtcatcgaggtgctgggggaaaccatg
gatccgggcatggagattcagattgccctgcgcagccatgatattccccacgtctggccg
gaagaggtcaagcagcaggttgccaagctctccgagcaagtgccggaagaagccaagcag
ggccgcaaggatctgcgggagctgccgctggtcaccatcgacggggaagacgctcgtgac
tttgacgacgccgtgttctgtcagcccaagcgttccggcggctggcggctgtgggtggcc
attgccgatgtgtcttattatgtgcgtccgaactcggcgctggatgccgaagcctatcag
cgcggcaactcggtgtatttccccgagcaggtgatccccatgctgcccgaggtgctgtcc
aacggcctgtgttcgctcaacccgcaggtagaccgcttgtgcatggtggcggaaatgacc
atctctgccaccggcaagctgtccggcttcaagttctacgaggcggtaatgaactcccat
gcccgtctcacctacaccaaggtggcggccatactggaaggggacgaggtgctgcgtgaa
cgctatgcgccgctggtgccgcacctggaagagctcaatcagttgtaccaggccatgaaa
gaggcccggcatcagcgcggtgcggtggagttcgaaaccgaggaaacccggttcgtgttc
aatccccagcgcaagatcgagcgcattgtgccgctggtgcgcaacgacgcccacaagatc
atcgaagaatgcatgataatggccaacgtggccgctgcccgctttattgaaaagcaggaa
gcccacgccctgttccgggtgcacgacaaaccgggtgaagagaaactcaccggttttcgc
agcttcctcggcgagctcgggctggaactgaaaggcgggctggagccagagccggcggac
tatgccctgctcgccgagcagatcaaggacaggcccgatgcggaactgatccagaccatg
ttgctgcgctccatgaagcaggcggtctaccaggccgacaacatgggtcacttcggcctg
gcgctgaagtcctacgctcacttcacctcgcccattcgccgctacccggatctggtgctg
caccgcgccatcaaggcccagctggccaaaatgcacggcggcgagcgcagcaccaccggc
ggcgtgccctaccagtatgatcaggttgcccccatgggcgagcattgctcgatgaccgag
cgccgggccgacgatgccacccgcgatgtggccgactggctcaagtgcgaatacatgctt
gatcatgtgggcagcgagtttggcggcaccattgccaacgtcaccggctttggtttcttt
gtgcgcctcgacgagttccacatcgacggcctggtacacatctccaacctgcagaacgac
tactaccagttcgatccggcccgccagcagctgattggcgagaacttccgccgccgctat
cgcctgggcgacaaggtcaaggtcaaggtgatggcggtgaacctggacgagcgcaagatc
gacttcgagctggcggaagacgcccccaaaggcgacttcgacggcggcaagggggccaaa
aacctgaaatcgcgcaaacgtgccaagcccaccggcggcaagggcggcgacaagggtgaa
aaaggcgagaagagcgacaagccccgttcccgtaaccgcagccgcaagcgccgctga
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