Oceanimonas sp. GK1: GU3_10045
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Entry
GU3_10045 CDS
T01667
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
oce
Oceanimonas sp. GK1
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oce03016
]
GU3_10045
Enzymes [BR:
oce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GU3_10045
Transfer RNA biogenesis [BR:
oce03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GU3_10045
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
HTH_ABP1_N
Motif
Other DBs
NCBI-ProteinID:
AEY01765
UniProt:
H2FVY3
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All DBs
Position
2190679..2191779
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AA seq
366 aa
AA seq
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MTYTYIADNQSLADFCQTDATLLAIDTEFVRTRTFYARPGLYQLHDGTRTALVDPLAVTD
LSPLWRLLHDSNRLCLLHAGGEDLELFQHQSGALPARVHDTQLAAAFLGLGAQLGFAPLV
EQLLGVSLDKAHARTDWLARPLSAAQLSYAADDVIYLYPLYQQLHEQLAQKGLLDWFEQE
CEWAVKRRTVSVAPALAYLEMKNAWTLDRQALGILQRLCEWRLNEARKRDLAVNFVVREA
HLLQVAERAPQSLSDLNRLGLDPMEIKRHGQTLLGLVQQALAAPESWPEPVKRLVDFPGY
KAELKRIRGLVEQAGDASGVPAELIASKRLIHQYLSWKWRLEESEAAVPALLQGWRGDLL
RTKLEG
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgacttatacatacattgccgataatcaaagcctggcggacttttgccagaccgacgcc
accctgctggcgatagacaccgagtttgttcgtacccgcaccttttatgcccgtcccggc
ctgtaccagctgcacgacggaacacgcaccgccctggtcgatccgctggcggtcaccgat
ctgagccccttgtggcgactgttgcacgattcaaaccggctgtgcctgctgcatgcgggg
ggagaggatctggagttgttccagcatcagagcggtgccctgccggcccgggtgcatgac
actcaactggcggccgcctttctgggcctgggcgcccagctgggctttgcccccctggtg
gagcaactgctgggggtcagtctcgacaaggcccatgcccgcaccgactggctggcccgg
ccgttgtcggcggcccagctcagctacgccgccgatgacgtgatttatctttatccgctg
taccagcagctccatgagcagctggcgcaaaaaggcctgctggactggtttgagcaggaa
tgcgaatgggcggtgaaacggcggaccgtgagcgtggcgccggcgctggcgtatctggaa
atgaaaaacgcctggaccctggaccggcaggcgctgggtattttgcagcggctgtgcgaa
tggcggctgaacgaggcgcgcaagcgggatctggcggtcaactttgtggtgcgcgaggcg
cacctgttgcaggtggccgagcgggcgccgcaaagcctgagtgatctcaaccgactgggg
ctggatcccatggagatcaagcgccacggccagacgctgctggggctggtgcagcaggcc
ctggcggcgccggaaagctggcccgagccggtgaagcggctggtggactttcccggctac
aaggcggagctcaagcgcattcgcggcctggtggagcaggccggtgacgcctctggcgtg
ccggcggagctgattgcctccaagcggctgatccaccagtacctgagctggaaatggcgg
ctggaagaaagtgaagcggcggtgccggcgctgctgcagggctggcgcggcgacttgctg
cgcacaaagctggaagggtaa
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