Oceanimonas sp. GK1: GU3_11350
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Entry
GU3_11350 CDS
T01667
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
oce
Oceanimonas sp. GK1
Pathway
oce03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GU3_11350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oce03400
]
GU3_11350
Enzymes [BR:
oce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GU3_11350
DNA repair and recombination proteins [BR:
oce03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GU3_11350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEY02025
UniProt:
H2FWP3
LinkDB
All DBs
Position
complement(2469028..2472633)
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AA seq
1201 aa
AA seq
DB search
MSPSRPLALTFPLHGSRLIEASAGTGKTFTISALYLRLVLGHGGEQGFARELLPPEILVV
TFTDAATQELRDRIRARLVEAAAVFRGEAEGDELLATLRDDFPSEQWPGCAHRLDIAAQW
MDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLQTDHSELLAEVVRDYWRRQCYPLQGAAL
DWVIDHWQTPDALLPKLRPLLSEPGEADGELDALLEGTLSARARRLAELKAPWPAWADEL
ALLLDKAVADKAVDGRKLQARYYQPWLNKLRAWAGSREADLALGTGFERLTPEGLHAIWK
KGEPPVHPALEAMATLPGQLAALADPAEPALRHAAAWVRRHFELEKRRRAEMGFDDMLTR
LDEALAGENGPRLAEVIRQQFPVALIDEFQDTDPLQYRIFDTIYRVADNCADSGLFMIGD
PKQAIYAFRGADIYTYLSARAATEGRHYSLGTNFRSSTTMVAAVNRLFERAEAHPEGAFL
FRDGEHNPLPFVSVQARGRDEHWQCEGAPQPALTLWQLDTDDDQPVAGGVYLEQMAARCA
SHMTHLLNLGGQGRAGFAGEHGLTPVQPSDMAVLVRSFREAQAIREALAARGVRSVYLSD
KDSVFESPEAGDLLHWLRACAEPEQDGKLRAALATATLGLSLSELERLNQDERHWEGRVM
QFRDYRRIWQRQGVLPMVHRLLHDFALPARLLRGTEGERKLTNLLHLAELMQQAAATLDG
EQALIRHLADCREGERQAADEQVLRLESDAALVRVVTIHKSKGLEYPLVFLPFICSFRES
GVRGAPVQLHEGGRKRLLLNPTDEQKAQAERERLGEDLRLLYVALTRARHACWLGLADIK
VGNGRASRLHDSAMGRLLGGGAVLSGPLQDWLTPLASEHTALCAAPEVTGEGWVDTQRAP
SAPVWASPARPAAEHWWIASYSALLSREEAGQRFDDAAPERPEAGKSGDDELERPFVPLR
PFELPSLHRFPRGPAAGTFLHGLLELVLNEGLANQPEELASQLARRCQLRGLEEWATPLA
DWLQGLLATPLFDGGPALQALGCFQPEMEFWLEVSRVQIPALDALVRRHILPQRERPALA
PGRLNGMLKGFIDLVFEHDGRYYVVDYKSNWLGPDDADYTRAAMEDQILRHRYDLQYVLY
VLALHRQLILRLPDYDYDTHMGGALYLFVRRPGAVFAHRPPRELIESLNTLFCGATEESL
P
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgagcccatcccgtccgctggcgctgacctttcccctgcacggcagccggctgattgaa
gccagtgccggcaccggcaagacctttaccatttccgcgctgtacctgcggctggtgctg
ggccatggcggcgagcagggctttgcccgagagctgctgccgccggagatcctggtggtc
acctttaccgacgccgccactcaggagctgagagaccgcattcgcgcccggctggtggaa
gcggcggcggtattccgcggcgaggctgagggcgatgagctgctggcgaccctgcgggat
gactttccctcggagcagtggcccggctgtgcccaccggctcgatatcgccgcccagtgg
atggacgaggcggcggtgtccaccattcacggctggtgtcagcgcatgctgcgcgagcac
gcctttgacagtggcagcctgtttacccagaccctgcagaccgatcacagtgagctgctg
gccgaggtggtgcgcgattactggcgccgtcagtgctaccccctgcagggcgcggccctc
gactgggtgattgaccactggcagacaccggatgcgttgttgcccaaactacggccgctg
ctgagcgagcccggcgaggccgacggcgagttggatgccctgctggaaggcaccctgagc
gcgcgggcgcggcggcttgccgagcttaaagcgccctggccggcctgggctgacgagctg
gcgttgctgctcgacaaggcggtggccgacaaggcggtggacgggcgcaagctgcaggcc
cgttattaccagccctggctcaacaagctgcgggcctgggccggctccagggaggcagac
ctggctctcggtaccggctttgaacggttgacccccgagggcctgcatgccatctggaaa
aagggggaaccgccggtacacccggcgctggaggccatggccaccctgcccgggcaactg
gccgccctggccgaccccgccgagccggcgctgcgtcatgccgccgcctgggtgcgtcgg
cactttgagctggaaaaacgccgccgcgccgaaatgggctttgacgacatgctcacccgt
ctcgacgaggccctggcgggggagaacggcccgcggctggcggaggtgatccggcaacag
ttcccggtggcgctgattgacgaatttcaggacacggatccgctgcagtaccgtattttc
gacaccatttaccgagtagccgacaactgcgccgacagcggcctgtttatgataggggac
cccaagcaggccatatacgcctttcgcggcgccgatatttacacctatctgtcggcccgg
gccgccaccgaaggccgtcactacagcctcggcaccaactttcgttcctccacgaccatg
gtggcagcggtcaaccggctgtttgagcgggccgaagcccaccccgaaggcgcgtttttg
tttcgcgacggcgagcacaatccgctgccctttgtgtcggtgcaggcgcgcggtcgtgac
gagcactggcaatgcgagggcgcgccgcagccggcgctgaccctgtggcagctggacacc
gacgacgatcagccggttgccggcggcgtctacctcgagcagatggcggcccgttgtgcc
agccacatgacgcatctgctcaatctgggcggccagggccgtgccgggtttgccggtgag
catggcctgaccccggtacagcccagcgacatggcggtgctggtgcgcagctttcgcgag
gctcaggccattcgtgaagccctggcggcccgaggggtgcgcagcgtgtatctgtccgac
aaggactcggtgtttgaaagccccgaggcgggggatctgctgcactggctgagggcctgc
gccgagccggagcaggacggcaaactcagggcggcgctggccaccgccaccctggggctc
agtctgtctgagctggagcggctcaatcaggacgaacgccactgggaaggcagagtgatg
cagtttcgggattaccgccgtatctggcagcgccagggcgtgctgcccatggtgcaccgg
ctgctgcacgacttcgcgctgccggcccgcctgctgcggggtaccgagggcgaacgcaag
ctcaccaatctgttgcacctggcggagctgatgcagcaggccgccgccaccctggacggc
gagcaggcactgatccgccacctggccgattgcagggagggggagcggcaggccgccgac
gaacaggtattgcggctggaaagcgacgccgccctggtacgggtggtgaccattcacaag
tccaagggactggaatatcccctggtgtttttgccctttatctgcagctttcgggaaagc
ggcgtccgcggggccccggtgcagctgcacgagggcggccgcaagcggctgctgctaaac
cccaccgatgaacaaaaggcccaggccgagcgggagcggctgggggaagatctgcgcctg
ctctatgtggcgctgacccgggcccgccatgcctgctggctggggctggcggatatcaag
gtcggcaacggccgggcctcgcgcctgcacgactcggccatgggccggttgctgggcggc
ggtgccgtgctgagcgggccgctgcaagactggctcacgcccctggcaagcgaacacacc
gcgctgtgcgcggcgcccgaggtcaccggggaaggctgggtggatacgcaacgagcgccg
tcggcgccggtctgggccagcccggcccggcccgccgccgagcactggtggatagcgtcc
tacagtgccctgctcagccgggaagaggccggccagcgttttgacgacgccgcccccgag
cggcccgaagcgggcaaaagcggggatgacgagctggaacggccctttgtgccgctgcgc
ccctttgagcttcccagcctgcatcgctttccccgtggtccggcggcgggcacttttttg
catggcctgctggagctggtgctgaatgaagggctggcaaatcagcccgaggagctggca
tcccagcttgcccggcgctgccagttgcggggcctggaggagtgggccacgccgcttgcc
gactggctgcaggggctgctggccacgccgctgtttgacggtggcccggcattgcaggcg
ctcggctgttttcagccggaaatggagttctggctggaggtcagccgagtgcagatcccc
gcgctggatgcactggtgcgacgccatattctgccgcagcgggagcggccggcactggcc
ccgggccggctgaacggcatgctcaagggctttatcgatctggtgtttgagcatgacggc
cgttattacgtggtggactacaagtcgaactggctgggcccggatgacgccgattacaca
cgggcggcgatggaggatcagatccttcgccaccgttacgatctgcaatacgtactctat
gtgctggcgctgcatcgccagttaatactgcggctgcccgattacgactacgacacccac
atgggcggtgccctgtatctgtttgtgcgccggcccggcgcggtgtttgcacaccggccc
ccccgtgagctgatagaaagcctgaatacgctgttttgcggtgccaccgaggagagcctg
ccatga
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