Oceanimonas sp. GK1: GU3_12915
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Entry
GU3_12915 CDS
T01667
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
oce
Oceanimonas sp. GK1
Pathway
oce03030
DNA replication
oce03430
Mismatch repair
oce03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GU3_12915
03430 Mismatch repair
GU3_12915
03440 Homologous recombination
GU3_12915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oce03032
]
GU3_12915
03400 DNA repair and recombination proteins [BR:
oce03400
]
GU3_12915
Enzymes [BR:
oce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GU3_12915
DNA replication proteins [BR:
oce03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GU3_12915
DNA repair and recombination proteins [BR:
oce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GU3_12915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
AEY02336
LinkDB
All DBs
Position
complement(2818324..2821752)
Genome browser
AA seq
1142 aa
AA seq
DB search
MVDGLSKIGPINKRVQELGYPALALTDEMNLCGLVRFYGDAHGKGLKPIVGTDVWVQSEE
LGEQLFRLTLLAMDNTGYQNITLLISRAYERGHIQHRPVIDKAWLAEHSDGLIILSGGRE
GDVGTYLLKGNQALAEQCLAFYHQHFADRYYLELLRTGRADEESYLHMAVELAAAQQLPV
VATNEVVFLDKSDFDAHEIRVAIHDGYTLDDKRRPKRYSPEQYLKSPEEMAELFADIPEA
LENSVEIAKRCNVTVRLGEYFLPDFPTGDMSIEDFLVKRSEEGLEERLEFLFPDPAVRAE
KRGEYDERLKIELQVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKI
TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVAELYGRDAVSQIITFGTM
AAKAVVRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEVEPKLPELYDQDEEVRALID
MARILEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGRHPVTQFDKNDVEYAGLVKFDF
LGLRTLTIIDWALGMINPRLEKEGKPPVDIAAIPIDDQASFQLLKRYETTAVFQLESRGM
KDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAVSYPDAQWQHESLKPI
LEPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPEEMAKQRAGFEAGAVANGI
DGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDK
VVTLVDECQRMGLTLIPPDVNTGRYRFTVNDDGHIVYGIGAIKGVGEAPIESILEARESG
GPFRDLFDFCNRVDLKKLNKRVMEKLILSGAMDRLGPHRASLMATLEEAMKAADQHAKAE
ALGQGDMFGVLVEEDKVEHAFADVAPWPDKIWLDGERDTLGLYLTGHPINQYARELRQYT
SGRLSEVQPGGRDRVSTVAGLVIASRVMTTKRGNRMGILTLDDKSGRLDVTLFSDALERY
ESLLEKDKILVISGQVSFDDFSGGLKMSAREVLDISDARERFARGLALYIDKSRIDQGFF
TQLLDILTPVRAGVCPVRVTYNRPGARAELTLGTEWRVTPTDQMLESLRALLGQDKVELI
FD
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggtggatggcctgtccaaaatcggccccatcaacaagcgggtgcaggagctgggctat
ccggccctggcactgaccgacgagatgaacctgtgcggcctggtgcgcttttacggcgat
gcccacggcaaggggctgaaacccattgtcggcaccgatgtgtgggtgcaaagcgaagag
ctgggcgagcagctgttccgcctcaccctgctggccatggacaacaccggttaccagaac
attaccctgctgatctcccgagcctacgagcgcggccacattcagcaccggccggtgatc
gacaaggcctggctggccgaacacagtgacgggctgatcattctgtccggcggccgggaa
ggggacgtgggcacctatctgctgaagggcaaccaggccctggcggagcagtgcctggcc
ttttaccatcagcactttgccgaccgttactatctggagttgctgcgtaccggccgcgcc
gatgaagaaagctacctgcatatggcggtggagctggcggcggcacagcagttgccggtg
gtggccaccaacgaggtggtgtttctcgacaagagtgacttcgacgcccacgaaattcgc
gtcgccattcacgacggctacaccctggacgacaagcgccggcccaagcgctacagcccc
gagcagtacctgaaaagcccggaggaaatggccgagctgtttgccgacattcccgaggcg
ctggaaaacagcgtggaaatcgccaagcgctgcaatgtcaccgtgcgcctgggcgagtac
tttttgccggactttcccaccggtgacatgagcattgaagactttctggtcaagcgctcg
gaagaggggctggaggagcggctcgaattcctgttcccggatccggcggtgcgcgccgaa
aagcggggcgagtacgacgaacgcctgaaaatcgagcttcaggtgatcaaccaaatgggc
tttccgggctacttcctcatcgtgatggagtttattcagtggtccaaggacaacggcatt
cccgtgggcccgggccggggctccggtgccggctccctggtggcctatgcgctgaaaatt
accgatctcgacccgctggaatttgacctgctgtttgaacgcttcctgaacccggagcgg
gtgtcgatgcccgacttcgacgtcgacttctgcatggaccggcgcgacgaggtgatcgag
cacgtggccgagctctacggccgggatgcggtatcccagatcatcacctttggcaccatg
gccgccaaggcggtggtgcgcgacgtgggtcgggtgctgggccacccttacggctttgtg
gatcgcatttccaagcttattccccccgatcccggcatgaccctggccaaggcctttgag
gtcgagcccaagctgcccgaactctatgatcaggacgaggaagtgcgggcgctgatcgac
atggcccgcatcctggaaggggtgacccgcaacgccggcaagcacgccggcggggtggtg
attgcccccaccaagatcaccgacttcgcgcccctttactgcgacgccgaaggccgccac
ccggtcacccagttcgacaagaacgacgtggaatacgcgggcctggtcaagttcgacttt
cttggcctgcgcaccctgaccatcatcgactgggcgctgggcatgatcaaccccaggctg
gaaaaggaaggcaagcccccggtcgacattgccgccattcccatcgacgaccaggcctcg
ttccagctgctcaaacgctatgaaaccacggcggtgttccagctcgaatcccggggcatg
aaggatctgatcaagcggctgcagccggactgctttgaagacatgatagccctggtggcc
ctgttccgtccgggcccgctgcagtcgggcatggtggacaactttatcgaccgcaagcac
ggtcgcgaggcggtgtcctaccccgacgcacagtggcagcacgagtccctcaagcccatt
ctggaacccacctacggcattattctgtatcaggagcaggtgatgcagattgcccaggtg
ctggcgggctattccctcggcggcgccgacctgctgcgccgggccatgggcaagaaaaaa
ccggaagaaatggccaagcagcgggccggctttgaggcgggggccgtggccaacggcatc
gacggcgagctggcgataaaaatctttgacttggtggagaaattcgccggttacggattc
aacaagtcacactccgccgcctatgccctggtgtcgtaccagaccctgtggctgaaaacc
cactacccggcggagttcatggcggcggtgatgaccgccgacatggacaacaccgacaag
gtggtgaccctggtggacgaatgccagcgcatgggactgacgctgatcccgcctgacgtc
aacaccggccgctaccgctttaccgtgaacgacgacggccatattgtgtacggtatcggc
gccatcaagggggtgggtgaggcacctatcgagtccattcttgaggcgcgtgaaagcggc
ggcccgttccgggatttattcgacttctgcaaccgggtggatctgaaaaagctcaacaag
cgagtgatggaaaagctgatcctctccggggccatggaccggctgggtccgcaccgggcc
tctctgatggccaccctggaagaggccatgaaggccgccgatcagcacgccaaagccgag
gccctgggccagggcgacatgttcggcgtgctggtagaggaagacaaggtggagcacgcc
tttgccgacgtggcgccctggcccgacaagatctggctggacggcgaacgcgacaccctt
gggctttacctcaccggtcaccccatcaaccagtacgcccgggagctgcgccagtacacc
agcggccggctcagtgaagtgcagcccggcgggcgggatcgcgtcagcacggtggccggg
ctggtgatcgcctcccgagtgatgaccaccaagcggggcaaccgcatgggcatcctcacc
ctggacgacaagtcgggccggctggacgtgaccctgttctccgatgcactggaacgctat
gagtctttgctggaaaaagataaaattctggtcatcagcggacaggtcagctttgacgac
ttctccggcggccttaaaatgtcggccagggaagtgcttgatatcagcgatgcccgggaa
cgttttgcccgcgggctcgcactgtacatcgacaaaagccggattgatcagggctttttt
actcaattgctggacatactcacgccggtaagggcgggcgtatgtcctgtgcgtgtgacc
tataaccgacccggcgcaagagccgagctcaccctgggcactgaatggcgggtaaccccc
accgaccagatgctggaatcgctcagggccttgctggggcaggacaaggtcgaactgatt
tttgactag
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