Oceanimonas sp. GK1: GU3_13805
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Entry
GU3_13805 CDS
T01667
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oce
Oceanimonas sp. GK1
Pathway
oce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GU3_13805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oce03019
]
GU3_13805
Enzymes [BR:
oce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GU3_13805
Messenger RNA biogenesis [BR:
oce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GU3_13805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AEY02514
UniProt:
H2FT77
LinkDB
All DBs
Position
3005236..3006612
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AA seq
458 aa
AA seq
DB search
MSFASLGLNDNLVQAIHECGYTQPTPIQQQAIPLVLKGGDLLAGAQTGTGKTAGFGLPML
QRLSETKARPLANGRAPVRALVLTPTRELAAQVEENLRAYAKHTDLRTLVMFGGVSINPQ
MKALGRKVDIVVATPGRLLDHVSQRSIDLSRVEMLVLDEADRMLDMGFIRDIRRILALLP
KQRQNLLFSATFSDEIKTLAEDLLHQPEHIEVARRNATAETISQRFFEVDKGRKRALLSY
HIGHHNWRQVLVFTRTKHGANRLAEQLDKDGLPAMAIHGNKSQGARTKALSEFKSGGIRV
LVATDIAARGIDISELPHVVNYELPNVAEDYVHRIGRTGRAGSNGEALSLVSAEEKPLLK
AIEKLIKQSADLEQVAGFEPDPNAPVAAPEPSRGGNRGRQGAGQRNGGQRSGGQRSGEQR
SGGGQRGNGGEGNRNGANAQRRRPRSNGNGARSASQNG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgcttccctcggtctgaacgataacctcgttcaagccattcacgaatgcggt
tatacccagccgacccctattcagcaacaggccattccgctggtactgaaagggggcgat
ctgctcgccggcgcccagaccggcaccggcaagaccgccggtttcggcctgcccatgctg
cagcgccttagtgaaaccaaggcccgccccctggccaacggccgggccccggtgcgcgcc
ctggtgctcactcccacccgcgagctggccgcccaggtggaagaaaacctgcgcgcctac
gccaaacataccgatctgcgcaccctggtgatgttcggcggcgtcagcatcaacccgcaa
atgaaggcactgggccgcaaggtcgatatcgtggtggccaccccgggccggctgctggac
catgtgtcccagcgctccatcgatctgtcccgagtggaaatgctggtgctggacgaagcc
gaccgcatgctcgacatgggctttattcgcgacattcgccgcattctggccctgctgccc
aaacagcggcagaacctgctgttttccgccaccttctccgacgaaatcaagaccctggcg
gaagatctgctgcaccagcccgagcacattgaagtggcccgtcgcaatgccaccgccgag
accatttcccagcgcttctttgaagtggacaagggccgcaaacgcgccctgctcagctac
catatcggccatcacaactggcgtcaggtgctggtgttcacccgcaccaagcatggcgcc
aaccgcctggcggaacagctcgacaaggacggcctgccggccatggccattcacggcaac
aagagccagggcgcccgcaccaaggccctgagcgagttcaagagcggcggcattcgcgtg
ctggtggccaccgacatcgccgcccgcggcatcgacatcagcgagctgccccacgtggtc
aactacgagctgcccaatgtggcggaagactatgtgcaccgcatcggccgcaccggccgg
gccggcagcaacggcgaagcgctgtcgctggtcagtgccgaggaaaaaccgctgctgaag
gccattgaaaaactcatcaagcaaagtgcagacctggagcaggtagccgggttcgaaccc
gatcccaacgccccggtggccgctcccgagccttcccgcggtggcaaccggggacgccag
ggtgcaggccagcgcaatgggggtcaacgcagtggtggccagcgtagtggtgagcagcgt
agtggcggtggtcagcgcggcaacggcggtgaaggcaaccgcaacggggccaatgcccag
cgccgccgtccccgcagcaatggcaacggtgcccgttcagccagccagaacggttaa
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