Oceanimonas sp. GK1: GU3_15435
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Entry
GU3_15435 CDS
T01667
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
oce
Oceanimonas sp. GK1
Pathway
oce03410
Base excision repair
oce03430
Mismatch repair
oce03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GU3_15435
03430 Mismatch repair
GU3_15435
03440 Homologous recombination
GU3_15435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oce03400
]
GU3_15435
DNA repair and recombination proteins [BR:
oce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GU3_15435
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GU3_15435
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GU3_15435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AEY02840
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All DBs
Position
complement(3375511..3377244)
Genome browser
AA seq
577 aa
AA seq
DB search
MSVSSPLPIRRREPVAHRLPSELSPILQRLYASRGLTSPEQLNLQASALHKPVFRGMSEA
VRLLMQAMAEQRRILIVGDFDCDGATSSALMVHGLRAMGAQRVNYLVPNRFDYGYGLSPQ
VVEEAVALGAELLITVDNGISSISGVAAAKAAGMQVIVTDHHLPGDETPEADAIVNPNQH
GCEFPSKNLAGVGVAFYLLLALRSALSEQGWFEQRGIRPPNMADYLDLVALGTVADVVAL
DGNNRVLVHQGLQRMRAGRLRPGIQALIDISGRNQQRLVASDLGFALGPRLNAVGRLDDM
SMGVACLLCDDLNEARRLAAQMDELNRERKAIETSMQQEALATLTRVRISDGALPSGLVL
HQDDWHQGVVGLVASRIKEQYFRPVIAFAEAGDDELKGSGRSIPGVHLRDLLEAVNSRHP
GLIAKFGGHAMAAGLSITKAALAPFKAAFEQMVEEWVSPELLTGEILSDGELAPTELTLE
LAEQLRFAGPWGQAFPEPLFDGEFRIIQQRLVGDKHLKLVLSPDEGRTVIDAIAFNVDLG
TWPNAAIQKAQLVYKLDVNEWRGRRQLQLLVERLAPL
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgtcttctcctctgcccattcgccggcgtgagccggtggcccaccggctgcct
tccgagctgtctcctatattgcagcggctgtatgccagccggggactgacctctcctgag
cagctcaatctgcaggccagtgccttgcacaagccggtgttcaggggcatgagtgaggcg
gtccgcctgctgatgcaggcgatggcggagcagcgccgcattttgatcgtgggcgacttc
gattgcgacggtgccaccagctcggcgctgatggtacacggcctgcgggccatgggcgcg
cagcgggtcaactacctggtgcccaaccgctttgattacggctatggcctgagcccccag
gtggtggaagaagcggtggccttgggcgccgagctgctgatcaccgtggataacggcatc
tccagcatcagcggggtggcggcggccaaggccgccggcatgcaggtgatcgtgaccgac
catcacttgcccggcgacgagacgcctgaggccgatgccatcgtcaaccctaaccagcat
ggctgtgagtttccgtccaagaacctggccggggtgggggtggccttttacctgctgctg
gcgctgcgctcggccctgagcgagcaaggctggtttgagcaacggggcattcggccgccc
aacatggcggattacctggacctggtggcgctcggcaccgtggccgacgtggtggcgctg
gacggcaataaccgggtgctggtgcaccagggcctgcagcgcatgcgcgccggccggttg
cgtcccggtattcaggcgctgatcgacatctccgggcgcaaccagcagcggctggtggcc
tccgatctgggctttgccctggggccgaggctcaatgcggtgggccgactcgacgacatg
tccatgggggtggcctgcctgctctgtgacgatctcaacgaggcccgccggctggcggcg
caaatggacgagctcaaccgggagcgcaaggccatcgagaccagcatgcagcaggaggcg
ctggccaccctgaccagggtgcgtatcagtgacggcgcgctgccgtcggggctggtgctg
caccaggacgactggcatcagggggtggtggggctggtggcttcgcgcatcaaggagcag
tatttccggccggtgatcgcctttgccgaggctggcgacgacgagctgaaaggctcgggc
cgctccattcccggggtgcacttgcgggatctgctggaagcggtaaacagccgccatccc
ggcctgatagccaaatttggcggccacgccatggccgcgggcctgtcgataaccaaggcc
gcgctggcgccgttcaaggcggcctttgagcaaatggtggaggaatgggtcagccccgag
ctgctgaccggcgagatcctcagcgacggcgagctggcgcccaccgagctgaccctggag
ctggcggagcaactgcgctttgccggtccctgggggcaggcctttcccgagccgctgttc
gacggcgagtttcgcattattcagcagcggctggtgggcgacaaacacctgaagctggtg
ctgagtccggacgaaggccgcaccgtgatcgacgccattgcctttaacgtggatctgggc
acctggcccaacgccgccattcagaaagcgcagctggtgtacaagctggatgtgaacgag
tggagggggcggcgccagctgcaactgctggtggagcggctggcgcccttgtag
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