Okeanomitos corallinicola: WJM97_01775
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Entry
WJM97_01775 CDS
T10416
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ocf Okeanomitos corallinicola
Pathway
ocf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJM97_01775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocf03019
]
WJM97_01775
03009 Ribosome biogenesis [BR:
ocf03009
]
WJM97_01775
Enzymes [BR:
ocf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WJM97_01775
Messenger RNA biogenesis [BR:
ocf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WJM97_01775
Ribosome biogenesis [BR:
ocf03009
]
Prokaryotic type
rRNA processing factors
WJM97_01775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF2752
Motif
Other DBs
NCBI-ProteinID:
WZB88448
UniProt:
A0ABZ2UW76
LinkDB
All DBs
Position
complement(408440..410533)
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AA seq
697 aa
AA seq
DB search
MPKQIIIAEQHQIAAVFSEDQIQELVVATGHHQIGDIYLGVVENVLPGIDAAFVNIGDPE
RNGFIHVTDLGPLKIKRSSAAITELLTPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVV
LMPYGRGVNLSRRIKSESERNRLRALAILIKPAGMGVLVRTEAEGKPEEAIIEDLELLQR
QWEVIQQEAQSTRAPALLNRDDDFIQRVLRDMYGADVNRIVADSSTGLRRVKQYLQNWSG
GQTPQGVLIDHHRDRSPILEYFRINAAIREALRPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKAL
KADKARPQIAQLTELGLVELTRKRQGQNIYELFGEPCPTCGGLGHTVRLPGEIEHRMPIP
AADIPERFTPMPQREQRMPTARISEPREAYDGFGEGFDDTELSPVNLVNHPSYQELGDNK
RRSRTRRSRIGINGTNGKDEIRLSGFPHDSDLDLDGDGEINSSSENSSLLPDVSDRDTTR
TPSLIKSGWSEKPERAKLKIDPVKPVVEPPQIVSIEMSSQEQDMFALMGISPGVKLESEV
KNPKSVIFNVVQPGEEPSNSITELTSEPPVSETPKPEVNKVKITTPKAETEEPSSEDSPN
VGFESFTNEEETNQTSTTPNRRRRRRSSASNPDSEDG
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaattattattgcagagcaacatcagattgctgctgtattttccgaagat
caaatccaagaactcgttgttgccactggtcatcatcaaattggtgatatctacttaggt
gttgtagaaaatgtattacctggtatagatgcagctttcgtcaatatcggcgatccagaa
cgcaacggttttattcatgttactgacttaggaccgttaaaaattaagcgtagttccgca
gctattactgaattgctgacaccacagcaaaaagtattagtgcaagtaatgaaagagccg
actggcacaaaaggcccaaggctaacaggtaatattaccttgccaggacgttatgtagtg
ctaatgccctacggtagaggggtaaatctgtctagacggattaaaagtgaaagtgagcgc
aaccgtctccgcgccctagcaattttaattaaacctgccggtatgggtgtcttggtgcgg
acagaagctgaaggaaaaccagaagaagcaatcattgaagacttagaattgctacaaaga
caatgggaagtaattcagcaagaagcccaatctacccgcgctcctgccttactgaatcgg
gatgatgactttatccagcgggtattgcgggatatgtacggtgcagatgtgaatcgcata
gttgctgattccagcactggtttaagaagagttaaacagtatttacaaaactggagtgga
ggtcaaacaccacagggcgtattaattgaccatcaccgcgatcgctcacccattttagaa
tacttccgcatcaatgcagctattcgtgaagccctccgacccagagtagacttaccttcc
ggtggttacatcattatcgaacccacagaagctttaacagtaattgacgttaactccggt
tcttttactcgttctgcaacagctagagaaactgtcttgtggacaaattgtgaagcagct
acagaaattgcccgtcaactgcgtctgcgaaacattgccggtgtgattgtagttgatttc
attgatatggaatcaagacgtgaccaactacaagttttagaacattttaacaaagcccta
aaagcagacaaagcccgtccacaaattgcccaattaactgaactaggtttagtagaactg
acccgcaaacgccaaggtcaaaacatttatgaattatttggtgaaccttgtccaacctgt
ggtggtttaggacacaccgtacgcttaccaggggaaatagaacaccggatgcctattccc
gcagcagacattccagagcggtttacacccatgccgcaaagagaacagagaatgcccact
gcacgcatttccgaaccacgggaagcctatgatggttttggagaaggatttgatgataca
gaattgagtcctgttaaccttgttaaccatcctagttatcaagaactaggagataacaaa
cgtcgtagccgtacccgcaggagtcggatcggtatcaatgggactaatggcaaagatgaa
atccgattaagtggttttcctcacgattcagatttagacttggatggtgatggtgaaatc
aattcttcatcagaaaattcatctctcctccctgatgtgtcagaccgagacactacacgt
acacccagtttgatcaaatccggttggagtgagaaaccagaacgtgccaagctgaaaata
gatcctgtcaaaccagtggtagaaccaccacagattgtttctatagaaatgtcttcccaa
gagcaagatatgtttgctttgatgggaatctctccaggagtcaaattagaatcagaagtt
aaaaatcccaaatctgtgatttttaacgtggttcaaccaggagaagaaccaagcaatagt
ataactgaattaacttcagaaccaccagtttcagaaacaccaaagcctgaagttaacaaa
gtaaaaattaccacaccaaaagctgagacagaagaaccatcttcagaagattctccaaac
gttggatttgaatcttttacaaacgaagaagaaacaaatcaaacctctactactcctaat
cgtcgtcgtcgtcgccgttcttcggcttcaaatccagattcagaggatggttaa
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