Okeanomitos corallinicola: WJM97_02460
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Entry
WJM97_02460 CDS
T10416
Name
(GenBank) ribonuclease R family protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ocf Okeanomitos corallinicola
Brite
KEGG Orthology (KO) [BR:
ocf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocf03016
]
WJM97_02460
Enzymes [BR:
ocf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
WJM97_02460
Transfer RNA biogenesis [BR:
ocf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
WJM97_02460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
HTH_RNase_II
CSD_RNase_II
KhtT_N
Motif
Other DBs
NCBI-ProteinID:
WZB88567
UniProt:
A0ABZ2UUC6
LinkDB
All DBs
Position
complement(589845..591902)
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AA seq
685 aa
AA seq
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MEKGTLVEFKVQGDSRLGVVDRPDGKTRWFVIDARGQSHSLAPRQITYTVNSNGTTYKPG
DIPNFLKEVQPYLDPSSLEVAWELLVEDGENATSRQMANLLFSESEPQHCYAAHCLLSED
KLYFKQKGDAYEPRSAAQVAERKHQIEVEAQKAKGQQEFLARVEQALNGDTVEWQRHDRQ
RLEALEKYATLVADIIRMGINADVLVRTYPPPAPVLETMNMLGRSATPQTALQLLIDLSW
WSPHENLFLRRSAIPVQFPNQVLEVAQENLDSPPADLDTNRVDLTHLKVYTVDDESTTEI
DDGLSWETLPDGREQLWVHIADPTRWLIPEDELDLEARKRGSTVYLPTGMIPMFPEVLAT
GPMSLVQGRICCALSFGVVLDENGGVEEYRIHPSLIKPTYRLTYEDVDEMLELGVEAEPE
IAAIANLAQKRKTWRYNQGAISINMPEAMIKVKDDDISIDILDDSPSRQLVAEMMILAGE
VAARYGQTHNIPLPFRGQPQPELPPEEELLQLPAGFVRFCAMRRCMPKSEMSINPVRHAG
LGLDTYTQATSPIRRYSDLLTHFQLKAHLRGENLPFSAEELKEVMMTVTTTTQELTMVER
QTNRYYALEYLRRHPEQVWQITVLMWLREDSNLALILLEDLGLQLPMMFRRTVCLGEQVS
VKVSIADPQKDIIQFQEIIYQEAVN
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtggagaagggtacgctagttgaattcaaagttcaaggtgacagtcgtctgggagtggta
gatcgtccagacggtaaaacccgttggtttgtaatagacgcaagaggacagtctcacagc
ctcgcacctagacaaataacttacacagttaatagcaacggaacaacctacaaaccaggt
gatattcccaactttttaaaggaagtccaaccatatctagatccatcaagcttggaagtg
gcttgggaactattagtggaagatggggaaaatgcaacttcccgccaaatggcaaacttg
ttgttttcagaatcagaaccacaacattgctatgctgctcattgcttgttatcagaagac
aaactttatttcaaacaaaaaggggatgcttatgaaccccgcagtgcagcacaagtagca
gaacgtaaacatcaaattgaagtagaagcccaaaaagccaaaggacagcaggaattttta
gcccgtgtagaacaggcacttaatggcgacaccgtagaatggcaacgtcacgatcgtcag
cgtttggaagcactagaaaaatatgcaactctagtggcagatatcatcagaatgggaata
aatgctgatgttttagttcgtacttatccaccgccagccccagtattagaaaccatgaat
atgctgggacgttcagcaacaccccagacagcattacaacttttgatcgacctgagttgg
tggagtcctcatgaaaacctattcctgcgtcgttctgcgattcccgttcagttccccaat
caggtattagaagtggcgcaagaaaatttagattctcccccagcagacttagacaccaac
cgtgttgatcttacccatctcaaggtatatacagttgatgacgaaagtaccaccgaaata
gatgatggtttaagctgggaaacattaccagatggtagagaacaactgtgggtacacatt
gctgatcctacccgctggttaataccagaagatgaattagacctagaagccagaaaacgg
ggtagtacagtttacttgcctacgggaatgatccccatgttcccagaggttttggccaca
gggccaatgagtttggtacagggaagaatttgttgcgcccttagttttggggttgtgtta
gatgaaaacggtggtgtagaagaatatagaatacatcctagtttgatcaaacctacctat
cgcctcacctatgaagatgtagatgagatgctggaattaggagtagaagcagaaccagaa
attgccgcgatcgctaatttagctcaaaaaaggaaaacttggcggtataaccaaggcgcg
atcagtatcaatatgccagaggcgatgatcaaagtcaaagatgatgatatcagcattgat
attttagatgattctccatctcggcaattagtagcagaaatgatgattttagcaggggaa
gtagcagcacgttatggacaaacccataacattcctttacccttccgtggtcaaccccaa
ccagaactacccccagaagaagaattattacaacttccagctggctttgtgcgtttttgt
gccatgcgtcggtgtatgcccaaaagtgaaatgagcattaacccagtgcgtcatgctgga
ttaggattagatacatatacccaggcaacttcccctattcgtcgttacagcgacctactc
acccacttccaacttaaagcacatttgcggggagaaaacttgcccttttctgctgaagaa
ctaaaagaagtgatgatgacagtcaccactactacccaagaactaacaatggtagaacga
cagactaacagatattatgctttggaatatttgcgtcgtcatcctgaacaagtatggcaa
attacagttttgatgtggttgcgggaagatagtaacttggcattaattctgttagaagac
ttaggtttgcagttaccaatgatgtttagacgtactgtgtgcttaggtgaacaagtatca
gtgaaagtcagtatcgctgacccacagaaagatattattcagtttcaagaaatcatttac
caagaagctgtaaattag
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