Okeanomitos corallinicola: WJM97_06005
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Entry
WJM97_06005 CDS
T10416
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ocf Okeanomitos corallinicola
Brite
KEGG Orthology (KO) [BR:
ocf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocf03032
]
WJM97_06005 (topA)
03400 DNA repair and recombination proteins [BR:
ocf03400
]
WJM97_06005 (topA)
Enzymes [BR:
ocf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
WJM97_06005 (topA)
DNA replication proteins [BR:
ocf03032
]
Prokaryotic type
DNA Topoisomerases
WJM97_06005 (topA)
DNA repair and recombination proteins [BR:
ocf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
WJM97_06005 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WZB89233
LinkDB
All DBs
Position
complement(1385558..1388203)
Genome browser
AA seq
881 aa
AA seq
DB search
MSTIVIVESPTKARTIRNYLPKDYRVEASMGHVRDLPQSASEIPAAVKGEKWAQLGVNIE
ADFEPVYVVPKDKKKIVSQLKEALKNADELILATDEDREGESISWHLYQLLKPKVPTKRM
VFHEITQEAIKKALANCRTIDEKLVRAQETRRILDRLVGYTLSPLLWKKIAWGLSAGRVQ
SVAVRLLVSKERQRRAFHEGSYWDLKASLLQGKSPFSSQLVTLGGTKVATGSDFDAATGE
ITAGRNVVLLNEEQALALKERITGKTWTVADIEERSVTRKPSPPFTTSTLQQESNRKLRL
SARDTMRVAQSLYEQGYITYMRTDSVHLSDQAITAARSCVEQKYGKEYLSPQPRQYTTKS
KGAQEAHEAIRPAGSSFRTPQETGLSGREFSVYDLIWKRTVACQMADSRQTQIAVQLQVE
DAGFRSSGKRIDFPGYLRAYVEGSDDPEAALEDQEVILPALKVGDHPSCKELEAVGHETQ
PPARYSEASLVKTLESEGIGRPSTYASIIGTIIDKGYAQLVNNALIPTFTAFAVTDLLEK
HFPDIVDPSFTSKMEQTLDEIATGEAKWLPYLQKFYLGEQGLETLVREQESKIDATKART
IELENLDAKVRIGKYGPFIEVENGEGVVTASIPKDLTPADLDPKQVEFLLRQKTAGPDQV
GRHPETGEPIYVKIGTYGPYVQLGDKTDENPKPKQASLPKGITPENVTLEMAVGLLSLPR
HLGEHPHTGAKIKASLGRFGPYVVHDQGKDGKDYRSLKATDDVLTISLARALELLAEPKK
GRGSSKSKAALRELGNHPEDEAPVNIYDGPYGLYIKHNKTNVGLPEGQTVETITLSMALE
LLAAKASTKSTRKTTKSKTDKTKSTTTKSSSTRGKKKEEAN
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactatcgtcattgtcgaatctccgaccaaagctcgtaccattcgcaactaccta
ccaaaagactatcgggtagaagcatccatgggtcatgtccgtgacctaccccagtcagct
agtgaaattcccgctgctgtcaaaggggaaaaatgggcgcagctgggggtaaatatagaa
gccgactttgaaccggtgtatgttgtccccaaagacaaaaagaaaattgttagccaactc
aaggaagctctaaaaaatgcggatgaattaatcttagcgactgatgaagacagggaaggt
gaaagtattagctggcacttgtaccagttattgaaacccaaagtaccaactaagcggatg
gtgtttcatgaaattacccaggaagcgattaaaaaagctctggcaaactgtcgcaccatt
gatgagaaactggtacgcgcccaagaaacccgacgcattttagaccgactggtaggatat
accctatcgccgctgttgtggaaaaaaatcgcctggggactgtccgcgggacgtgtccag
tctgtagccgtgaggctgttggtatctaaagaacgtcaacgtcgggctttccatgaaggt
agttattgggatttaaaagccagtttattacaggggaaaagcccttttagctctcagtta
gtgacgctaggagggacgaaagttgccacaggtagtgatttcgatgccgccacgggagaa
ataactgctggacgtaatgtggtgttattaaatgaggagcaagctttagcactcaaggaa
cggatcacaggtaaaacctggactgttgccgatatagaagagcgttcagtcactcgcaaa
ccttctcccccgtttactacttctacattgcagcaggagtctaaccgtaaactgagacta
tcagcacgggatacaatgcgagttgcccaaagtctgtacgagcaaggttatattacctat
atgcggacagattctgtacatttgtcagatcaagcaatcaccgctgctcgcagttgtgta
gagcaaaagtacggtaaagaatatctcagtcctcagccccgacagtacactactaaatct
aaaggcgcgcaagaggcacacgaagcgattcgtcctgctggtagcagtttccgcactccc
caagaaacgggtttaagtgggcgggaattttctgtctatgatttgatttggaagcgaaca
gttgcctgtcaaatggctgactctcgccaaacccaaattgctgtccagttgcaggtggaa
gatgcaggttttcgttcctctggtaagcggatagattttcctggatatctccgcgcttat
gtggaaggttcggatgatcccgaagcagcattagaagaccaagaggtaatcttaccagcc
ttaaaagttggagatcatcccagttgtaaagaattagaagcggtgggacatgaaacccag
ccaccagctagatactcagaagctagtttggtgaaaaccctagaaagtgaaggtattggt
cgtcctagtacctacgccagcattattggcacgatcattgacaagggttatgctcagtta
gtgaataatgctttaattccgacttttacagcctttgctgttaccgacttactggaaaaa
cattttcccgatatcgtcgatcctagctttacgtcgaaaatggagcaaaccttagatgaa
attgctacgggtgaagcaaaatggctaccttatctccagaaattttatttgggagaacag
ggtttagaaactttagtcagggaacaagaaagtaaaattgatgcgactaaagcgagaact
atagaactagaaaatttagatgctaaagtccgcattggtaaatatggcccttttattgaa
gtagaaaatggtgaaggtgtggtgacagcttctattcctaaagacctgacaccggctgac
cttgaccccaaacaggtagaatttctcctccgacaaaaaactgctggaccagatcaagta
gggcggcatcctgaaaccggtgaacccatttatgtgaagataggtacttatggcccctat
gtccagttgggtgataaaaccgatgaaaaccccaaacctaagcaagcttctcttcctaaa
gggataactccagaaaatgtgactttggagatggctgtgggactgttatctttaccgcga
catttgggtgaacatccacacacgggagcaaaaattaaagctagtttgggtagatttgga
ccttatgtggttcatgaccaaggtaaggatggcaaagattaccgttctttaaaagctacc
gatgatgtattgacaatttccttagcacgtgctttggaattgttggcagaaccaaaaaaa
ggtaggggtagtagtaagtcgaaagcagctttacgggaactgggtaatcatcccgaagat
gaagctccggtgaatatttacgatggaccctatggactttatattaagcacaacaaaact
aatgttggtttgcctgaaggacaaaccgtagaaaccataactttgtctatggctttagaa
ttactggcagctaaagcttctactaagtccacacgcaaaaccactaaatcaaagactgat
aaaactaagtccacgactacgaaatcatcaagtactagagggaagaaaaaagaagaagca
aattag
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