Okeanomitos corallinicola: WJM97_11910
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Entry
WJM97_11910 CDS
T10416
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ocf Okeanomitos corallinicola
Pathway
ocf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ocf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WJM97_11910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocf03021
]
WJM97_11910
03400 DNA repair and recombination proteins [BR:
ocf03400
]
WJM97_11910
Enzymes [BR:
ocf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WJM97_11910
Transcription machinery [BR:
ocf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WJM97_11910
DNA repair and recombination proteins [BR:
ocf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WJM97_11910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WZB86117
LinkDB
All DBs
Position
2762936..2766997
Genome browser
AA seq
1353 aa
AA seq
DB search
MTENMIFRNLVVNKGQLRKLIAWSFTHYGTARTAVMADKLKDLGFRYATKAGVSISVDDL
MVPPSKKSLLEAAEAEILSTEERFKRGEITEVERFQKVIDTWNGTSESLKDEVVTHFKQT
NPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIISS
YGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREIDCGTSRGIILGDMIENSKVLIPIG
TRLMGRVVGEDVIHPVTKEMIAPRNTPVSDDLAEEIQAAGVKQVLVRSPLTCEAARSVCQ
HCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQVRAKTAGT
VKISRKLKTRPYRTRHGEDALYAETNGTLNIEGEGGDNQEISITQGSTLYIQPGQKVKVA
QLIAEVALGGRTARANTEKAVKDVATDLAGEVQFADVVAEQKTDRQGNTTTTATRGGLIW
ILSGEVYNLPPGAELVVKNGDAIASNGVLAETKLTSVHGGMVRLPEATPGKATREIEIIT
ASVILDQATVTVQSSQGKNNYLVSTSNNQTFNLRTTPGTKVQNGQIVAELIDDSYRTTTG
GFLKFAGIEVQKKGKAKLGYEVVTGGTLLWIPEETHEVNKDISLLLVEDGQYVEAGTEVV
KDIFCQNSGVIEITQKNDILREVVIKPGELLMVDDPEAVLSRDNTFVQPGEEFQGVVATE
LRYIQYVESPEGPALLSRPVVEFAVPNNPDLPSTTSVGQEANGRSIQLRAVQRLPYKDSE
RVKSVEGVELLRSQLVLEIEEEAEDITASPLAADIELVNDDEHPEIQRLQLVILESLVIR
RDIAADATQGSTHTTLEVEDGLTIEPGAVVARTQILCKEGGIVRGVRRDVEAVRRCLVLR
EVDMTTITTTAPPTVKKGDLLVEGVEIAPGIVAPESGQVLAVKAGEKLQVTGDSQDGSVS
PCSYSITLRTGRPYRVSPGAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELL
EARKPKEACILSRNAGEVKVVYGEGDETSIVRDAYSIKVMEAGGTVTDYPLGPGQNLIVS
DGVQVNAGQPLTDGPSNPHEILEIFFSLGSDEGIYACASHALQKVQSFLVNEVQMVYQSQ
GIDISDKHIEVIVRQMTNKVRIDDGGDTTMLPGELVELRQVEQVNEAMSITGGAKAEYTP
VLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGYN
TYEETTTIEDYGTDLGSGVLDEADDPLDMVLDDRTAKLYSLDAPDLDSGTYGGRQSDRSI
LDDDDDLIADEVISAIEGEEEEEEYADDDDFED
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaacatgatttttcgtaaccttgtcgttaacaagggtcaactgagaaaatta
attgcgtggtcgtttacccattatgggacagcacggacagcggtaatggcggataaactc
aaagacctgggtttccgctatgctaccaaagccggagtatccatcagcgtagatgatttg
atggttcccccttccaaaaaatccctcctggaagcagcagaagcagagattctcagcacc
gaggaacggtttaaacggggtgaaattactgaagtggaacgtttccaaaaggtaattgat
acctggaatggaacatcagaaagtttaaaagacgaagttgttacccactttaaacaaacc
aatcccctcaactccgtctacatgatggccttctctggagcgcggggaaacatttcccaa
gtcaggcagttagtaggaatgcggggactaatggcagatccccaaggagagattattgac
ctacctattaaaaccaacttccgggaaggactaacagttacagaatatattatttctagt
tacggagcaagaaagggattagttgatacagcactgagaaccgccgactctggatattta
accagacgattggtggatgtttcccaagatgtaattgtgcgggaaatagactgcggtaca
agccggggcataatcttaggagacatgatagaaaactccaaagtattaatccccataggc
acaagattaatggggagagtggtaggtgaggatgtaattcatcctgtgaccaaagaaatg
atcgcccctcgcaacaccccagtatccgatgatttagccgaagaaattcaagctgctgga
gttaaacaggtattagtgcgatcgccactgacctgtgaagcagcccgttccgtatgtcaa
cattgttatggttggagtttggcccatgccaaaatggtagacttgggtgaagccgtaggg
attattgctgcccaaagtataggtgaaccgggtacacagttaaccatgcgtaccttccac
accgggggggtatttaccggggaagttgcccaacaggtgcgggcaaaaacagcgggaaca
gtgaaaatatcccgtaagttaaaaacccgtccctaccgtacccgtcatggtgaagatgcc
ttgtatgcagaaaccaatgggacgttaaacattgaaggtgaaggtggagacaaccaggaa
atttccattacccaaggttctaccttatatattcaaccagggcaaaaggtaaaagttgcc
cagttaattgctgaggtagcattgggcggtaggactgccagggcaaatacagagaaagct
gtcaaagatgtagccactgacttggctggagaagtacaatttgccgatgtggtagcagaa
caaaaaaccgaccgtcaggggaatactaccactacagccactagaggcggtttgatttgg
attttgtctggggaagtttataacttaccaccaggggcagaattggtagtcaaaaatggt
gatgccattgccagtaatggagtcttggcagaaaccaaactcaccagtgtccatgggggt
atggtgcggctaccggaggcgacaccagggaaagcgactagggaaattgaaattatcacc
gcttctgtgattttagatcaggcaacagtaacggtgcagagttcccaaggcaagaataat
tatttagtttccaccagcaataatcaaacctttaacctgcggactacaccgggaactaaa
gttcaaaatgggcaaattgtcgccgagttaattgatgacagttaccggactaccaccggg
ggatttttaaaatttgccggcattgaggtgcagaagaaaggtaaggccaagttaggttat
gaggtagtaactgggggaacactactgtggattccagaggaaacccatgaggtaaataaa
gatatttccttattgttggtagaagatgggcagtatgtggaggcaggaacagaagttgtt
aaagatattttctgtcaaaacagtggtgtaattgaaatcacccagaaaaacgacatcctc
agagaagtggtgattaaaccaggggaattgctaatggtggatgatccagaggcagtatta
agccgggataacacctttgtccaacctggggaagaattccaaggagtagtagccacagag
ttacgctatatccagtatgtagaatctcccgaaggtccggccttattgagtcgtccggtg
gtggaatttgccgttcctaataatcctgacttaccttcgactacatccgtcggtcaagaa
gccaatggccgttctattcaactgcgggcagtacaacgtttaccctacaaagattccgaa
cgggtgaaatctgtagaaggggtggaactattgcgatcgcaattggtgttagaaattgaa
gaagaagcggaagatattacagcttctcccttagctgcggacattgaattagttaatgac
gatgaacatcctgagattcaaagattgcagctggtaattttagaatccttagtcattcgt
cgtgacatagctgccgatgccacccaaggcagtacccacactaccctagaagttgaagat
ggtctgaccattgaaccaggggcagtggtagctaggactcagattttgtgtaaggagggt
ggtattgtccgtggtgtccgcagggatgtagaagcggtgcgtcgttgtttggtactgaga
gaagtagacatgaccaccattaccaccacagccccacccactgtcaagaaaggtgatttg
ttagtagagggtgtagaaattgccccagggatagtagcgccagaatctggacaggtatta
gcagtcaaagcaggtgagaagttacaagttacaggtgacagtcaggacgggagtgtttcc
ccatgctcctattccattaccttgcggactggtcgtccttatcgggtcagtcctggggcg
gtgttgcagattgaagatggggacttggtgcaacggggtgacaatttggtattgttagta
tttgagcgggctaaaactggggatattatccaaggtttaccgagaattgaagagttgtta
gaagctcgtaaacccaaggaagcctgtattttgtctcggaatgccggagaagtgaaggta
gtttatggcgaaggagatgaaacttccatagtccgtgatgcctacagtatcaaggtgatg
gaagctggtgggactgtgactgattatccccttgggcccggacaaaacctgatagtttcc
gatggggtgcaggtaaacgctggtcaacctttaaccgatggcccttctaacccccatgag
attttagagatattcttcagtttgggttctgacgaaggaatttatgcctgtgctagtcat
gccttacagaaagtacaaagctttttggtgaatgaggtacagatggtgtaccagtcccaa
ggcattgatatttctgacaaacacattgaggtcattgtccgccagatgaccaacaaagtc
cgcattgatgatggtggggacaccaccatgttaccgggtgagttggtggaactgcgacag
gtggaacaggtgaatgaggctatgtccattactggtggagctaaggctgaatatactcca
gtgttgttggggattactaaggcatccttaaataccgacagtttcatttctgcggcttcg
ttccaggaaaccactagggtgttaactgaagcagctattgagggtaagtctgattggcta
cgtggtttaaaggaaaacgtgatcattggacggttgatacccgcaggtactggttataac
acctatgaagaaaccactaccattgaagattatggtacagatttgggttctggagtatta
gatgaagccgatgatcctctggatatggtattagatgaccgcactgctaaattgtacagt
ctagatgctcctgatttagatagtggtacttatggtggtagacagagtgatagatccatt
ttggatgatgacgatgatttaattgccgatgaagtcatatctgctattgaaggagaggaa
gaagaagaggaatacgcagatgatgatgattttgaggattaa
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