Okeanomitos corallinicola: WJM97_12285
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Entry
WJM97_12285 CDS
T10416
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ocf Okeanomitos corallinicola
Pathway
ocf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJM97_12285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocf03019
]
WJM97_12285
Messenger RNA biogenesis [BR:
ocf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WJM97_12285
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WZB86188
UniProt:
A0ABZ2URX9
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All DBs
Position
2854025..2855809
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AA seq
594 aa
AA seq
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MAKNEANAALKIIPLGGLHEIGKNTCVFEYEDEIILLDAGLAFPTEAMHGVNIVLPDTTY
LRENRHKIKGMIVTHGHEDHIGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTE
LRTVMPRDVVRIGEAFFVEYIRNTHSIADSFTVAIHTPLGVVIHTGDFKIDHTPVDGERF
DLQRLAEHGEKGVLCLLSDSTNAEVPGFTPSESSVYPNLDRVFSQAAGRLFVTTFASSVH
RINLILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCDDSLFQPLHTVRGLPDENVLIL
TTGSQGERMAAMTRIANKEHPHIKIREGDTVVFSANPIPGNTIAVVNTIDKLMIQGANVV
YGRDKGIHVSGHGCQEEQKLMIALTRPKFFVPFHGEHRMLIKHSQTAQSMGIPKENMVII
QNGDVIELTENSIGVGAKVPSGIELVDTTSSGMVSSKVLHERQRMASEGLATIAAAIDWN
GKLLAKPDIHLQGVVTSIEKSLMLKWLQQRIEEILSVRWPEFVTGQGMNDIDWGGVQGML
EKELARSLRRELQCQPSVTLLMQFPDEAQVQAQAQAVKVSDGRRRRTRSTAVAS
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaacgaagctaatgctgccctaaaaattattcctttgggtggtttacatgaa
ataggtaaaaacacctgtgtgtttgagtatgaagacgaaatcattctcttggatgcaggt
ttggcctttcccacagaagcaatgcacggagtaaatatcgttttacctgacactacttat
ctacgggaaaatcgtcataaaattaaaggtatgatcgttactcacggtcacgaagatcac
attggtggtattgcttttcacctcaaacaatttgatatcccagtcatttatgggccaaga
ctagcaatggcaatgttagagggtaaattggaagaagcaggggtacgcgatcgcacggaa
ctaagaaccgtaatgccccgtgatgtagttagaatcggtgaagccttttttgttgagtac
attcgcaacactcactccatcgctgacagttttaccgttgccattcacaccccattaggt
gtagtgattcataccggagactttaaaattgaccataccccagtggatggtgaaagattt
gacttgcagcgtttagctgaacatggtgaaaaaggtgtactgtgcttattgagtgattcc
actaatgcagaagtaccaggatttacaccatcggaaagttccgtttatcctaaccttgac
cgggtattctcccaagccgcagggcgactatttgtaactacttttgcgtccagcgtccac
cgcatcaacttaatcttacagttagctaaaaagcataaccgagtagtaacagttgtggga
cgttcaatgttgaacttaattgcccatgcgcggaatttaggttacatcaaatgtgacgat
agcctatttcaacccctacatacagttcgtggtttaccagatgaaaacgtactgatttta
accactggttcgcaaggggaaagaatggcagctatgaccagaattgccaataaagagcat
ccccacattaaaattcgggaaggagatactgttgtcttctctgctaaccccattcctgga
aacaccattgcggtggtcaacaccattgataaattaatgattcaaggtgcaaacgttgtc
tatggcagagataaaggcattcacgtttccggtcacggttgtcaagaagaacaaaagcta
atgatagctttaacccgtcctaagttctttgtacctttccacggtgaacaccggatgttg
attaagcactcccaaactgctcaaagtatgggcattcccaaagaaaacatggtgattatt
caaaatggggatgtgatagaactgacagaaaattctatcggtgtgggtgctaaagtccca
tcaggaattgaactggtagatactacaagttcaggaatggtaagttctaaagtgctgcat
gagagacaacgcatggcttcggaaggactggctaccattgcagcggcaattgattggaat
ggtaaactactggctaaaccagatatccatttacaaggtgtggtaaccagtattgagaaa
tcactgatgttgaaatggttacagcaacggattgaagaaattctcagtgtgcgttggcca
gaatttgtgactggtcagggcatgaatgatatagattggggcggtgtgcaaggaatgtta
gaaaaagaattagctcgttctctacgtcgggagttgcaatgtcaaccttctgtaactctg
ttgatgcagtttccagatgaagctcaagttcaagctcaagctcaagcggttaaggtttct
gatggtagaagaagacggactcgttctactgctgtagcctcttaa
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