Okeanomitos corallinicola: WJM97_12300
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Entry
WJM97_12300 CDS
T10416
Name
(GenBank) RNA polymerase sigma factor, RpoD/SigA family
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
ocf Okeanomitos corallinicola
Brite
KEGG Orthology (KO) [BR:
ocf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocf03021
]
WJM97_12300
Transcription machinery [BR:
ocf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
WJM97_12300
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
WZB86191
LinkDB
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Position
complement(2856822..2857805)
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AA seq
327 aa
AA seq
DB search
MSTVNTEDENLNAKFTADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLEAKEDLAK
KLDHEPSLSEWAAHVNQSEKEVQQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLD
LIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI
KKVQRELAQKLGRSPTPTEIAHELAIEPAQIREYLNMARQPVSLDVRVGDNQDTELQEML
EDDGPSPEHYTTQEFLRQDLNNLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSR
ERVRQLEHQALAHLRRRRANVKEYVAS
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgtctactgttaacaccgaagatgaaaacttaaatgccaaattcacagctgatatggtg
cgaacctatctgcgagaaattggtcgtgtgccactcctaacccgtgagcaagaaattgtt
tatggtaagcaagtgcagcaaatgatgacattgctggaagcaaaggaagatttagctaaa
aaactagaccatgaacccagtttatcagaatgggctgctcatgttaaccaatcagaaaag
gaagttcagcagacggtaacacaaggtaagcgagccaagcaaaaaatgattgaagccaat
ttgcgcttggtagtagcgattgccaaaaaataccagaagcggaatatggaatttctggat
ttaatccaggaaggaacattaggactagaaagaggagtcgagaaatttgatcctatgcgg
ggttataaattctcaacctatgcttactggtggattagacaagcaatcacaagagcgatc
gcccaacaaggtcgtaccatccgcttacctatccatattaccgaaaagctgaacaaaatc
aaaaaagttcagcgcgaattggcacaaaaattaggcagatcaccaacacccactgaaatt
gcccatgaattagcaatagaacctgctcaaattcgagagtatttgaacatggcacgacaa
ccagtttctttagatgtacgtgttggtgacaaccaagacacagaactgcaagaaatgtta
gaagacgatggtccatcaccagaacattacaccacccaggaattcttgcgccaagacctc
aacaacctgttagcagaactcacaccccaacagcgggaagttttagcactccggtttggg
ttagaagatggaaacgaaatgtccttagccaaagttggagaacggttaaatcttagccgc
gaacgagtccgccaactagaacatcaagctcttgcacatttacgccgtcgtcgagccaat
gttaaagaatacgtcgccagctaa
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