Okeanomitos corallinicola: WJM97_19810
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Entry
WJM97_19810 CDS
T10416
Symbol
sbcC
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ocf Okeanomitos corallinicola
Brite
KEGG Orthology (KO) [BR:
ocf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocf03400
]
WJM97_19810 (sbcC)
DNA repair and recombination proteins [BR:
ocf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
WJM97_19810 (sbcC)
Archaeal homologous recombinant proteins
WJM97_19810 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
ABC_tran
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
WZB87582
UniProt:
A0ABZ2UR06
LinkDB
All DBs
Position
4536797..4539820
Genome browser
AA seq
1007 aa
AA seq
DB search
MIPVQLILKNFLSYRDAALDFAGLHTACICGSNGAGKSSLLEAITWAIWGESRATIEDDV
IYSGAPEVRVDFTFLNNQQTYRVIRNRVRGGTSVLEFQIETPAGFRPLTAKGMRATQDII
LQHIKLDYDTFINSAYLRQGRADEFMLKRPTERKEILAELLKLNQYDQLEEKAKDNSKQY
KGRIEELSRSLENVKTQLQEKTATKAELSQLEVQINKIQQQEAVDKIQLQSLQVVQHQRQ
NWEQQLNFTRQQYQNLSQDCDRLQQEKLSIQSQLTNLADILNQEAEINTGYTEYQSLQSQ
EEAFSTKFEQHTRATSFRQQQQQQLVKQIQSIERQLQQTEAELKALEQQEQELEQILTKS
SDVETALSQLAAAREHLNNLDQLQMQVSPLLQQRADLKSQIDRTHASLVARLEQLQATET
KLQTQHRHRPQLQQAVMDVGVKIEELEKKKVYLQRVQEKGQERRHFIERLQAQKREYEKL
LAELEQKLQMLQNPDALCPLCERPLDEHHWSTVIQKTQTEYEETQGLFWVLREQMAVSDR
EIQVLRQEYREINQQLSGYDELREKRGQLAAQLQATTDVQEQLKQIEVEKQHLERSLQGN
FDPEKQAELQQLDEYLQQLNYNEKDHALARSEVERWRWAEIQQAKIKDAKKKQAQLASKK
PELQGKIEELKAGIELEQTNSDTAKQIEALTREIAELNYSSEVHNKLRQAVRESQSWQLR
YQQLLSAKEQYPQIQNRLADLITSEKSRLVEQQKLTIQIDDIVEQLKATANPTEQINNLE
QQIAIRRQELDQKIAHFGRLEQRVHQLELLQTQCEQEQEQLKYCQQQQRVYQELAQAFGK
NGIQALMIENVLPQLEAETNQLLSRLSANQLHVQFVTQKAGRSGRSSKKKTKLIDTLDIL
IADARGTRAYETYSGGEAFRINFAIRLALAKLLAQRAGAALQLLIIDEGFGTQDNEGCDR
LIASINAIAADFACILTVTHIPHLKEAFQARIEVNKTQQGSNLSLSI
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgattccagtccaacttatcttaaaaaactttcttagttaccgtgatgcagctttagat
tttgccggcttgcatacggcttgtatttgtggttctaatggtgctggtaaatcttctctt
ttggaagctattacttgggctatttggggggaaagtcgcgctacgattgaagatgatgtc
atctattctggagcgccggaagtcagggttgattttacttttctcaataaccaacaaact
tatcgggtaattcgtaaccgtgttaggggtggaacgagtgttttagaatttcaaatagaa
actcctgctggttttcgtcctctgactgctaagggaatgcgagctactcaggatataatt
ttacaacatattaaactggattatgatacttttattaattctgcttacctacgtcaagga
cgagcagatgaatttatgctcaaacgtccgacggagcggaaggaaattttagcagagttg
ttaaaactcaatcaatatgatcagttagaggaaaaagccaaggataattctaaacagtat
aaaggtagaatagaagaattatcacgttctctggaaaatgttaaaactcaactgcaagaa
aagacagctacaaaagctgaattatcacagttggaagtacaaataaataaaattcaacaa
caggaagctgttgataaaattcaattacaaagtttgcaggttgttcaacatcaacgccaa
aattgggaacaacaattaaactttaccagacaacaatatcaaaatttgagccaagattgc
gatcgcttacaacaagaaaagttatctattcaatctcaactcacaaatttagcagatatt
ctcaatcaagaagcagaaattaataccggatatacagaatatcaaagtctgcaatctcaa
gaagaagctttttcgactaaatttgaacaacacacccgcgctaccagtttccgacaacag
caacaacagcaactggtcaaacaaatccaatccattgaacgtcaactacaacaaacagaa
gctgagttaaaagctttagaacaacaagagcaagaattagaacaaatcctcaccaagtct
tcagatgtagaaactgctttatctcagttagctgctgctcgtgagcatctaaataatttg
gatcagttgcaaatgcaagtcagtcctttgttacagcaacgagcagatttaaaaagtcaa
atagatcgcacccatgctagtctagtggcacgactggagcaattacaagccacagaaacc
aaactccaaacccaacaccgtcatcgtccacagctacaacaagcggtgatggatgtggga
gtgaaaattgaagaattagagaaaaaaaaggtttatttgcaacgtgtacaggaaaaagga
caggaacgcagacattttatagaacggttgcaagctcaaaaacgggaatacgaaaaatta
ctggcagagctagaacaaaagttacagatgctgcaaaacccagatgctttatgtcccttg
tgtgagcgtcctttagatgagcatcactggagtacagttatacagaaaacccaaacggag
tatgaggaaacccaaggactattttgggtgttacgagaacaaatggcagtttctgacaga
gaaattcaggtactcagacaggaatatcgagagataaaccagcaattatctggttatgat
gaactcagagaaaaacgaggacaattagcagcacagttacaagctactactgatgtacaa
gaacaattaaaacaaattgaagtagaaaaacaacatttagagcgttctttacagggaaat
tttgaccccgaaaaacaagcagaactccagcaattagatgaatatttgcagcagttaaat
tataatgagaaagatcacgctttagctagaagtgaagtagaacgttggcgctgggcagaa
attcaacaggctaaaattaaagatgcaaagaaaaaacaagcacaattagctagtaagaaa
ccggaattacaagggaagattgaggaattgaaagcgggaattgaattagagcaaactaat
tcggatacagctaaacaaatagaagctttaactagagaaattgccgaattaaattatagt
tctgaagttcataataaattacgtcaagctgtgcgagaatcccaatcttggcaattacgt
tatcaacaattattgtctgcaaaggaacaatatccacaaattcaaaataggttagcagat
ttaatcacttctgaaaaaagtagattagtagaacagcaaaaactaaccattcaaattgat
gatattgttgaacagttaaaagcgacagctaaccccacggaacaaattaataatttagaa
caacaaatagcaattagaagacaagaattagatcaaaaaatagctcattttggtaggtta
gaacaaagggtacatcaattagaattattgcaaactcagtgtgagcaagaacaggaacaa
ttaaaatattgtcaacaacaacagcgagtttatcaggaattagcgcaagcatttggtaaa
aatggtatccaagctttaatgattgaaaatgtcttacctcaactggaagctgagacaaat
caactactttcacgcttgagtgcaaatcaactgcacgtccaatttgtgactcaaaaagct
ggaagaagcggaagatcaagtaagaaaaaaactaagttaattgatacattagatatttta
attgctgatgcgaggggtacaagagcttatgaaacctattctggaggagaagcgtttaga
attaactttgcaattcggttagcattagcgaaattgttagctcaacgggctggtgctgca
ttacaattattgattattgatgaaggatttggtacacaggataacgaaggatgcgatcgc
ctaattgcttctattaatgcgattgcggctgactttgcttgtatcctcactgttacccat
attccccatttaaaagaagcatttcaagcacgaatagaagtaaataaaactcagcaaggt
tcaaatttatcgttatctatctaa
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