Okeanomitos corallinicola: WJM97_22345
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Entry
WJM97_22345 CDS
T10416
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ocf Okeanomitos corallinicola
Pathway
ocf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJM97_22345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocf03019
]
WJM97_22345
Enzymes [BR:
ocf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WJM97_22345
Messenger RNA biogenesis [BR:
ocf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WJM97_22345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HI1480
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WZB88056
UniProt:
A0ABZ2URN4
LinkDB
All DBs
Position
complement(5057189..5058532)
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AA seq
447 aa
AA seq
DB search
MSFSNLGLSNEIIRAVTELGYTKPTPIQTQAIPAVLSGGDLLAGAQTGTGKTASFALPLL
HRLSENNNIKSSSTGWVPIRALILTPTRELAAQIQENVYDYSKYLKLKSTVIFGGVSISP
QKRQLKSGVDILVATPGRLLDHLEQGTVNLSRVEVLVLDEADRMLDMGFIRDIRRILAIL
PKQRQNLLFFATFSDKIKELAAGLLDRPTMIEVARRNITAATIAQKAYKVDRDKKRQLLS
HLIKQDDWYQVLVFTRTKYGADRLVRQLGEDRIQALAIHGNKSQGARTHALAKFKDGKLQ
VLVATDIAARGLDISELPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEQHLL
ADIEKLIQQKLSLQTVAGFAVNPDIQPEPIQNGRRQKSQSGGEQDTVAKRKKAPRRSGKR
KTAPSAIDGKKYGGNSSSSRRAKKSDR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttccaatctcggcttgtccaatgaaattatccgcgcagtcacagaattaggt
tacaccaaacccacaccaattcaaacacaggcaattccagcagtattatccggtggtgat
ttattagcgggcgctcaaaccggtacgggaaaaaccgccagtttcgccttaccattgctg
cataggttgtcagaaaataacaatattaaaagtagttccactggctgggtaccaattcgg
gctttgattctcacccctacaagggaattagccgcccagatccaggaaaatgtttacgac
tatagtaagtatctcaagttaaaatcaacggtgattttcggtggtgtaagtatcagtccc
caaaaacgccaattaaaaagcggtgtagatattctggttgctactccaggcagactgtta
gaccatttggaacagggaacggtaaacctgtcacgggttgaggttttggtgttggatgaa
gcggatcggatgctggatatgggctttattcgtgatatccggcggattttggcgattcta
ccgaaacagcgtcaaaatttattattctttgctaccttctccgataaaatcaaggaatta
gccgcagggttgctagatcgtccgacgatgattgaggtagcacgccgcaatattactgct
gcaaccatcgcccaaaaagcttataaggtagaccgtgacaaaaaacgtcaattactgtca
cacttaattaaacaagatgattggtatcaagttctggtgtttactcggactaaatacggt
gctgaccgtctggtgagacagttaggtgaagaccgcatccaagcattggcgattcacgga
aataaaagccaaggggcgcgtacccacgctttagcaaagtttaaggatggtaagttacag
gtattggtagctacggatattgcggctaggggtctggatatcagcgaattaccccatgtt
gtcaattatgatttaccgaatgtaccggaagattatgtacatcgcattggccgcacaggt
cgcgctggtgcaacaggtgaagctgtttctctggtctgtgttgatgaacaacatttgtta
gcagatatcgaaaaactgatccagcagaagttatctttgcaaacggttgctggttttgca
gttaatcctgatattcagcctgaaccaattcaaaatggacgtagacaaaaatctcaatct
gggggtgagcaggatactgttgctaaacggaaaaaagcaccacgaagatcgggtaaacgg
aagacagcaccatcagctatagatggtaaaaagtatggtggtaattcttcttcctctcgc
cgggctaaaaaaagcgatcgctaa
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