Afipia carboxidovorans OM5 (Goettingen): OCA5_c00420
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Entry
OCA5_c00420 CDS
T01617
Symbol
mutM
Name
(GenBank) formamidopyrimidine-DNA glycosylase MutM
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Pathway
ocg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OCA5_c00420 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocg03400
]
OCA5_c00420 (mutM)
Enzymes [BR:
ocg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
OCA5_c00420 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
OCA5_c00420 (mutM)
DNA repair and recombination proteins [BR:
ocg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OCA5_c00420 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF6059
Motif
Other DBs
NCBI-ProteinID:
AEI04776
UniProt:
B6JCQ7
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All DBs
Position
complement(45434..46318)
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AA seq
294 aa
AA seq
DB search
MPELPEVETVRRGLIPAMEGVRIARVTAHRNDLRFPLQTDFVARLGGRVVTGLGRRAKYL
LADLDSGDVLLMHLGMSGSFRVAMDGGQEATPGIFHHPRSESRTHDHVVFEMDNGAVISF
NDPRRFGYMKIVARADLEAEPFLKALGPEPLGNEFNAAMLAQACAGKATSLKAALLDQRV
VAGLGNIYVCEALYRAHLSPKRRASTLASRTGAPSGHAERLVPAIRTVLNAAIEAGGSSL
RDHRQTTGELGYFQHSFQVYDREGEPCRTRGCKGTVKRFTQNGRSTFWCPSCQK
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcctgaagttgaaacggtccgccgcggccttattccagccatggaaggt
gtgcgtatcgcccgcgtcactgcccatcgcaacgatctgcgttttccgttgcagacggat
ttcgtcgcacggctcggtggtcgcgtcgtcaccgggcttggccgccgggccaagtatctg
ctggccgacctcgattccggcgacgtgctgctgatgcatctcggcatgtccggctccttc
cgcgttgccatggacggcgggcaggaggcgacgcccggcattttccatcatccgcgcagc
gagagccgcacccacgatcatgtcgtgttcgagatggacaacggcgcggtaatctcgttc
aacgatccgcgtcggttcggctacatgaagatcgtggcccgcgccgacctcgaggccgaa
ccgttcctgaaggcgctcggaccggagccgctgggcaatgaattcaatgccgcgatgctg
gcgcaggcctgcgcaggcaaggcgacctcgctgaaagcagcgctgcttgaccagcgcgtc
gtggcaggtctcggcaacatctatgtctgtgaagctctctatcgcgctcatctgtcgccg
aaacgccgtgcctcgacgctggcgtcgcgaaccggcgccccgagcgggcatgcggagcgg
ctcgtgccggcgatccgtaccgtcctcaatgccgcgatcgaggccggtggctcgtcgctg
cgcgatcatcgccagaccacaggtgaactcggctattttcagcattcgtttcaggtctac
gaccgcgaaggcgagccctgccgcacgcgtggttgcaagggcaccgtcaaacgctttact
cagaacggccgctcgaccttctggtgtccgagctgtcagaagtag
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