Afipia carboxidovorans OM5 (Goettingen): OCA5_c00740
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Entry
OCA5_c00740 CDS
T01617
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Pathway
ocg02020
Two-component system
ocg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OCA5_c00740 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OCA5_c00740 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocg03021
]
OCA5_c00740 (rpoN)
Transcription machinery [BR:
ocg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OCA5_c00740 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Arg_repressor
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AEI04807
UniProt:
B6JCM5
LinkDB
All DBs
Position
complement(82078..83727)
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AA seq
549 aa
AA seq
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MALTQRLEFRQSQALVMTPQLMQAIKLLQLSNLDLVAFVEGELERNPLLERASEDDAPRT
DAPATETEFSASEGGADESSGDSTESISDAGRSADPSEDWIARDLGSRSEMEQTFDASME
NVFTEEPSEAASRAAQDAVPSAYTEWGGGSSSDEDYNLEAFVAAEASLQDHLAEQLAVAF
TDPSARMIGQYLIDLVDEAGYLPADLGDVADKLGASAENVADVLAVLQTFDPPGICARNL
SECLAIQLRERDRFDPAMRALVENLDLLAKRDITGLKKICGVDDDDIADMIGEIRHLDPK
PGLKFAVTRTQTVVPDVYVRPGPDGGWLVELNSDTLPKVLVNQSYYARLAKTLRKDEDKS
YFADCLQNATWLVRALDQRARTILKVATEIVRQQDGFFTRGVAHLRPLNLKTVAEAIEMH
ESTVSRVTANKYMATNRGIFELKYFFTASIASADGGEAHSAESVRHRIRQMIDAEEPGAI
LSDDTLVERLRAEGVDIARRTVAKYREAMRIPSSVQRRRDKRYALGQASGHSAGAAPSST
DRSRDIASA
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacgcaacgtctggaatttcgccaatcgcaagctctggtgatgacgccgcag
ctaatgcaggcgatcaagctgttgcagctgtccaatctcgatctggtggcgtttgtcgaa
ggcgagcttgagcgcaatccgttgctcgagcgcgcgagcgaggatgacgcgccgcgcacc
gatgcgcccgcaaccgagacggaattctcggcatcggaaggtggtgcggacgaaagttcc
ggcgacagcactgaaagcataagcgatgccgggcgcagcgccgatccgtccgaggactgg
atcgcgcgcgatctcggcagccgcagcgagatggagcagacgttcgacgccagcatggag
aacgtcttcaccgaggagccctcggaggcggcctcgcgcgcggcgcaggatgccgtgccg
tctgcctataccgagtggggcggcggttcgtccagcgacgaggattacaacctggaggcg
ttcgttgcggcggaggcctcgctgcaggatcatctggccgaacagcttgcggtggccttc
accgatccgtcggcgcggatgatcgggcaatatctgatcgatctcgtcgatgaagcgggc
tatctgcctgccgatctcggcgacgtggccgacaagctcggggcatccgccgagaacgtg
gcggatgtgctcgcggtgctgcagacgtttgatccgcccggcatctgcgcgcgcaatttg
agcgagtgtctcgccattcagttgcgcgagcgcgaccggttcgatccggcgatgcgcgcg
cttgtcgagaatctcgatctgctcgcgaagcgagacattacgggcctgaagaaaatctgc
ggcgtcgatgacgacgacatcgccgacatgatcggcgaaatccgtcatctcgatccgaaa
cccggattgaaattcgcggtgacgcgcacgcagaccgtggtgcccgatgtctatgtgcgg
ccggggccggatggtggctggctggtcgaactcaacagcgacacgctgccgaaggtgctc
gtcaatcagtcctattacgcgcggcttgcgaagacgctgcgcaaggacgaggataaatcc
tatttcgccgattgcctgcagaacgcgacctggctggtgcgggcgctcgaccagcgcgcg
cgcacgatcttgaaagtcgcaacagaaatcgtccgtcagcaggacggattcttcacgcgc
ggcgttgcgcatttgcgcccgctcaacctcaagacggtcgccgaagcgatcgagatgcac
gaatcaaccgtgtcgcgcgttaccgccaacaaatatatggcgaccaatcgcggcattttt
gaattgaaatatttcttcacggcctcaattgcgtccgccgatggcggcgaagcgcattcg
gccgaatcggtgcgccaccgcattcgtcaaatgatcgacgcggaggaaccgggcgcaatt
ctgtcagatgatacgctggtggaacgtcttcgcgcagaaggtgttgatattgcccggcgc
accgtcgcgaaataccgggaagcgatgcggattccatcttccgtgcagcgccggcgcgac
aaacgctatgcgcttggtcaagcatccggccattccgcaggcgcagccccttcctccacc
gaccgttcgcgcgacatagcttccgcttga
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