Afipia carboxidovorans OM5 (Goettingen): OCA5_c06360
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Entry
OCA5_c06360 CDS
T01617
Name
(GenBank) transcriptional regulator, IclR family
KO
K20539
IclR family transcriptional regulator, blcABC operon repressor
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Pathway
ocg02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
OCA5_c06360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocg03000
]
OCA5_c06360
Transcription factors [BR:
ocg03000
]
Prokaryotic type
Helix-turn-helix
IclR family
OCA5_c06360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IclR_C
HTH_IclR
MarR_2
MarR
Dimerisation
HTH_24
HTH_20
HTH_10
Rrf2
LexA_DNA_bind
FaeA
SMC_Nse1
TrmB
DUF4423
HTH_27
Fe_dep_repress
Motif
Other DBs
NCBI-ProteinID:
AEI05359
UniProt:
F8BXE3
LinkDB
All DBs
Position
complement(668374..669183)
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AA seq
269 aa
AA seq
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MQRKAEMTTQTKPPVKKDLAPALTRGLGILTFIARTGRSVTLTEIADELGIAKSSAHGLL
ATLVNGGFLDRQADSTYRLGLRVVELANARIESSELPAEFYAIWNRYPQFHQEAAILAVL
DGPDVIYIACRNSPLALGITFRPGMKLPACCTATGKALLSTLSNSEVRDFYKRHEFARLT
QSSVPNVSKLIRQLEEIRERGFSIDDGETRDHMWSVGAPICGWEGQRSAAAVAISCLRSE
VTPDKIVRTSDFTKDFARALSEAGSALQS
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcaacggaaagcggagatgaccacgcagacgaaaccaccggtcaagaaagacctcgct
cccgcgttgacgcgcggcttagggatcttgacgttcattgcacgcaccggacggtcggtg
actctgacagagatcgccgacgaacttggaattgctaaaagctccgcgcatggactgctc
gcaacgctcgtgaacggcggcttcctcgacaggcaggcggacagcacgtatcggctcggc
ctgcgcgtggtcgaactcgcgaatgcacgcattgaaagctccgagctccctgcagaattc
tacgcgatctggaatcgctatccgcagtttcatcaggaagccgccatcctcgcggtgctg
gatggcccggacgtgatctacattgcatgccgcaacagcccgctcgcgctcggcatcacg
ttcaggcccggcatgaagctacctgcctgctgcaccgcgaccggcaaggcgctgctcagc
acgttgtcgaacagcgaggtgcgcgatttctacaagcgccatgagttcgcgcggctgacg
caaagcagcgttccgaacgtcagcaagctgatccgtcaactcgaggaaattcgcgaacgg
ggattttcgatcgacgacggagaaacgcgcgaccacatgtggtcggtcggcgcaccgatc
tgcggctgggaggggcaacgctccgccgccgcggttgcgatcagttgcctccgatcagag
gtgacgccggacaaaatcgtccggaccagtgactttacgaaagacttcgccagagccttg
tcagaagcaggcagcgctctccaatcctga
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