Afipia carboxidovorans OM5 (Goettingen): OCA5_c12970
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Entry
OCA5_c12970 CDS
T01617
Symbol
lcfB3
Name
(GenBank) long-chain-fatty-acid--CoA ligase LcfB
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Pathway
ocg00061
Fatty acid biosynthesis
ocg00071
Fatty acid degradation
ocg01100
Metabolic pathways
ocg01212
Fatty acid metabolism
ocg02024
Quorum sensing
ocg04146
Peroxisome
Module
ocg_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
OCA5_c12970 (lcfB3)
00071 Fatty acid degradation
OCA5_c12970 (lcfB3)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
OCA5_c12970 (lcfB3)
09145 Cellular community - prokaryotes
02024 Quorum sensing
OCA5_c12970 (lcfB3)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
ocg01004
]
OCA5_c12970 (lcfB3)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocg04147
]
OCA5_c12970 (lcfB3)
Enzymes [BR:
ocg01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
OCA5_c12970 (lcfB3)
Lipid biosynthesis proteins [BR:
ocg01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
OCA5_c12970 (lcfB3)
Exosome [BR:
ocg04147
]
Exosomal proteins
Exosomal proteins of breast milk
OCA5_c12970 (lcfB3)
Exosomal proteins of breast cancer cells
OCA5_c12970 (lcfB3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
AEI06013
UniProt:
B6JH07
LinkDB
All DBs
Position
1385504..1387045
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AA seq
513 aa
AA seq
DB search
MLIHQLLQDGRHSKPAIIFEGAVLSYAELDDLANQFAHLFGELRLDIGDRVSLLIGNEPL
VVASYFGLFKAGLIANPINNRLTASEVSFVLEHAQARVLITTPEFLPLALQAIAELANPP
RIVLLGAHVDAALPADVVSEQDLYRQKRTPRLVEGLTEQTPILLIYTSGTTGRPKGVLLS
HANVWADGVALSQGFRVTSDHVALCFMPLFHCNALIVSHISTFIGHGTIVLCRKFSAREH
WRLVADHQVTSFSAPPTVLAILLEREAEARDARIKLDFVKTGSAPLTVELATRFENRFGK
DILIEGWGLTECTATSTLNPLYAGGRRKIGSVGQALAGQKIAVVDDQGRFLPPHSTGELV
IQSPTMMLGYFRDEEATRRTIIDGWLHTGDLGRMDEEGYVFLVGRKKEIIIRGGENVSPL
EIEEVMCRHPSVRDVAVGGLPDRIWGEVVVACVVANGVASEQELIAHCRENLADFKVPVK
IAIVDELPRNATGKILRRDLAQFFQSGAKEMAS
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgttgattcaccaactcttgcaggatggacggcattccaagcccgcgatcatctttgaa
ggggcggtgctctcctatgcggaactggacgatcttgccaatcagtttgcccatctgttc
ggtgaactgcggctcgatatcggtgatcgggtcagtctgctgatcggtaacgagcctctg
gtggttgcttcctacttcggcttgttcaaggcggggctgattgcaaatccgatcaacaac
cgcctgacggcgagtgaagtctcgtttgtgctggagcatgcgcaggcgcgcgttctcatc
accacgccggaattcctgcctttggcgttgcaggcaatcgccgagcttgcaaatccgccg
cgcattgtcctgctcggtgcgcatgtcgatgcggccctgccggcggatgtcgtctcggag
caggatctctatcggcagaagcgcacgccacggcttgttgaaggtttgacggaacagacg
ccgatccttctcatttacacgtcgggcacgactggccgcccgaaaggtgtgctgcttagc
catgcaaatgtctgggccgacggtgtcgcgttgtcgcagggcttccgcgtgacttcggac
catgtggctctgtgtttcatgccgctgttccactgcaatgcgctgatcgtcagtcatatc
agcacgttcatcggccatggcaccatcgtgctgtgccggaaattcagcgcacgcgaacac
tggcggctggtggcggatcatcaggtcacgagcttcagcgcgccgccgaccgtgctcgct
attcttctcgaacgcgaagcggaggcgcgggatgcgcgcatcaagctcgatttcgtcaag
accggctcggcgccgctgacggtggagcttgcgacgcgcttcgagaacaggttcggcaag
gatattctgatcgaaggctggggcctcaccgagtgcacggcgacgagcacgctaaacccg
ctttacgcgggcggccgccgcaagatcggctccgtcgggcaggcgttggccgggcagaag
attgcggtggtggatgaccagggtcggttcctgccgcctcacagcactggcgaactggtc
attcaatcgccgacgatgatgcttggctatttccgcgacgaagaggcgacgcgcagaact
attatcgacggttggcttcacaccggcgatctcggccgtatggacgaagagggctatgtc
tttctcgtcggccgcaagaaggaaatcatcatccgcggtggcgagaatgtctcgccgctt
gagatcgaggaagttatgtgccgtcacccctcggttcgggacgtcgcggttggcggattg
ccggaccggatatggggcgaggtggttgtcgcctgcgttgtcgccaacggggtcgcgtcc
gagcaggaactgatcgctcactgccgcgaaaatctcgcggacttcaaggtccccgtcaaa
atcgcaattgtcgatgaactgccacgcaatgcgaccggaaagattctccgccgcgatctt
gcgcagttcttccagagcggggcgaaggagatggcatcatga
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