Afipia carboxidovorans OM5 (Goettingen): OCA5_c17930
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Entry
OCA5_c17930 CDS
T01617
Symbol
uvrA
Name
(GenBank) excinuclease ABC system, subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Pathway
ocg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OCA5_c17930 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocg03400
]
OCA5_c17930 (uvrA)
DNA repair and recombination proteins [BR:
ocg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OCA5_c17930 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OCA5_c17930 (uvrA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
RsgA_GTPase
DnaJ_CXXCXGXG
nSTAND1
AAA_23
AAA_21
BCA_ABC_TP_C
Motif
Other DBs
NCBI-ProteinID:
AEI06507
UniProt:
B6JFD2
LinkDB
All DBs
Position
complement(1937446..1940424)
Genome browser
AA seq
992 aa
AA seq
DB search
MDEVIKAKQRAQTSASRAITIRGAREHNLKNVDLEVPRDKLVVFTGLSGSGKSSLAFDTI
YAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIY
DYMRLLWARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYRKE
LAEYLKKGFQRVKIDGAFHELADAPTLDKKFPHDIDVVVDRIVVRPDIAQRLAESFETAL
KLAEGLAVVEFADAPATPAADTKKSEKKTAKIHDKSGPERLLFSEKFACPVSGFTLPEIE
PRLFSFNNPYGACPECGGLGVEQHIDPDLIIPDKDLSLRKGAIAPWAKSSSPYYIQTLQA
LGKFYKFTLDTKWKDLPKKTQTALLYGSGEDAIKFSYEDGTRSYDTKKPFEGIVTNIERR
FAETESEWAREELGKYFADVPCAGCHGYRLKPEALCVKVGGKHIGEISELSVKKAGEWFE
TVPDLLTTQQNEIAVRILKEIRERLSFLLDVGLNYLTLSRASGTLSGGESQRIRLASQIG
SGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVIVVEHDEDAIRLADHVVDVGP
GAGIHGGHIVARGTPDDVMKNPKSLTGKYLTGEKFVPIPERRPPNHRRTMKVINARGNNL
KNISAEIPLGLFTCVTGVSGGGKSTLLIDTLYKAIARKLNGAADAPAPHDRIEGLEHIDK
IIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYEPGRFSFNVKGGRCEACQ
GDGVIKIEMHFLPDVYVTCDTCKGKRYNRETLEVTFKSKTIADVLDMTVDEAEDFFKAVP
RIRETFRTLQRVGLGYIRVGQQATTLSGGEAQRVKLAKELSKRATGRTLYILDEPTTGLH
FHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDI
VQAPRSYTGKFLAPVLAKGQSGHLATSEEAAE
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagtcatcaaggccaagcaacgcgcccagacgagcgcctcgcgtgccatcacc
attcgcggtgcgcgcgaacacaatctcaagaacgtcgatctcgaagtgccgcgcgacaaa
ctcgtggtgttcacgggcctctcgggttccggtaagtcctcgctcgcgtttgacacgatc
tatgccgaaggccagcgccgctacgtcgaatcgctgtcggcctatgcgcggcaattcctc
gagatgatgcagaagccggacgtcgatcagatcgacggcctgtcgccggcgatctcgatc
gagcagaagaccacctcgaagaacccgcgctcgacggtgggcaccgtcaccgaaatctac
gactatatgcgcctgctgtgggcgcgcgtgggcgtgccctattcgcccgcgacgggactg
ccgatcgagagccagaccgtttcgcagatggtcgatcgcgtactggcgctgccggaaggc
acgcggctctatctgctcgcgccggtcgtgcgcggccgcaagggtgagtaccgcaaggaa
ctggccgagtatctcaagaagggttttcagcgcgtcaagatcgacggtgcattccatgag
cttgccgatgcacctacgctcgacaagaaatttccgcacgatatcgacgtcgtcgtcgac
cgcatcgtggtccgacccgacatcgcacagcggcttgcagaaagtttcgagaccgcactg
aagcttgccgaaggcctcgctgtcgtcgagtttgccgatgcgcctgcgacgccggctgcc
gacaccaaaaagtccgaaaagaagaccgcaaaaatccacgacaagagcggtcccgaacgg
ctgttgttctcggaaaaattcgcctgccccgtctccggtttcacgctaccggagatcgaa
ccgcggctgttctcgttcaacaatccctatggcgcctgcccggagtgcggcggcctcggc
gttgagcagcacatcgatcccgacctcatcatcccggataaggacctgagcttgcggaag
ggtgcgatcgcgccgtgggcgaagtcgtcctcgccctattacatccagacgctgcaggcg
ctcggcaagttctacaagttcacgctcgataccaagtggaaggacctgccgaagaagacg
cagaccgcgctgctctacggttcgggcgaggatgcgattaaattctcctacgaggacggc
acgcgctcttacgataccaagaagccgttcgagggcatcgtcaccaacattgagcgtcgc
ttcgcggaaaccgaaagcgagtgggcacgcgaggaactcggtaaatattttgccgacgtg
ccttgcgcaggctgtcacggctatcggctgaagcccgaggcgctatgcgtgaaagtcggc
ggcaagcacatcggcgaaatctccgaactctcggtcaagaaagccggcgagtggttcgag
accgtgcctgacctgctgacgacccagcagaacgagatcgcggttcgtatcctgaaagag
atccgcgagcggctgtcgttcctgctcgatgtcggcctcaactatctgacactgtcgcgt
gcgtccggcacactatcaggcggcgagagccagcgtatccgccttgcttcgcagatcggc
tcgggcctcaccggcgttctctacgttctcgatgagccctcgatcggcctgcatcagcgc
gacaacgcgcgcctgctcgatacgctgaagcggctacgcgatctcggcaacaccgtgatc
gtggtcgaacatgacgaggacgccatccgtctcgccgatcatgtggtcgacgtcggcccc
ggcgccggcattcatggcggccacatcgtcgcgcgcggcacgcccgacgacgtcatgaaa
aatccgaagtcgctcaccggaaaatatctgaccggcgaaaaatttgtgccgattcccgag
cgccgtccgccgaaccatcgccggacgatgaaggtcatcaacgcgcgcggaaataacctc
aagaacatctcggcggaaattccactcggcctgttcacttgtgtcaccggtgtgtccggc
ggcggcaagtcgacgctcttgatcgatacgctctacaaggcaatcgcgcgcaagctcaac
ggcgcggccgacgcgcccgcaccgcatgatcgcatcgaggggctggagcatatcgacaag
atcatcgatatcgaccagtcgccgatcgggcgcacgccgcgctcgaaccccgcgacctac
accggcgcattcacaccgatccgcgagtggttcgcagggctgccggaagcgaaggcgcgc
ggctacgagccggggcgcttctccttcaacgtcaagggcgggcgctgcgaagcctgtcag
ggcgacggcgtcatcaagatcgagatgcacttcctgccggacgtctacgtcacctgcgat
acctgcaagggcaagcgctacaatcgtgaaacgctcgaggtgacgttcaagagcaagacc
attgccgacgtgctcgacatgacggtcgatgaggcggaagacttcttcaaggcggtgccg
cgcatccgcgagacattccgcaccctgcagcgcgtcggcctcggctacatccgcgtcggc
cagcaggcaacgacgctgtcgggcggcgaggcgcagcgcgtcaagctcgccaaggaactc
tcgaagcgcgcgaccggccgcacgctctacattctcgacgagccgaccacgggcctgcat
ttccacgacgtcgcaaagcttctcgaggtgctgcatgaactggtggcacagggcaacacc
gtggtggtgatcgagcacaatctcgaagtcatcaagacggccgactgggtgatcgacctc
ggccccgagggcggcgatggcggcggcgagatcgttgcctggggcccgccagaggatatc
gtccaggcgccgcgcagctacaccggcaaattccttgcgcccgtgctggcgaagggccaa
tccggccatctcgccaccagcgaggaagccgcggagtaa
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integrated database retrieval system
