Afipia carboxidovorans OM5 (Goettingen): OCA5_c20070
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Entry
OCA5_c20070 CDS
T01617
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Pathway
ocg03410
Base excision repair
ocg03430
Mismatch repair
ocg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OCA5_c20070 (recJ)
03430 Mismatch repair
OCA5_c20070 (recJ)
03440 Homologous recombination
OCA5_c20070 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocg03400
]
OCA5_c20070 (recJ)
DNA repair and recombination proteins [BR:
ocg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
OCA5_c20070 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
OCA5_c20070 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OCA5_c20070 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AEI06714
UniProt:
B6JHH3
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Position
complement(2172134..2173975)
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AA seq
613 aa
AA seq
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MTPPATALPIETPHAFLGVKRSATGKLWRDRLDVRGAAQALAIAQRHQLPEMLARIIAGR
GIDIDAVEDFLDPTIRKLLPDPSTVTQMEAAAKRLADAVMRGEMVAIFGDYDVDGATSSA
LLAWHLRHCGLDPLIHIPDRIFEGYGPNVDAIRMLSSRGAKLLVTVDCGTTSLEPLAEAR
KLGMDVVVIDHHQCNDELPTVNAIVNPNRPDDLSGLGHLAAVGLVFVTLVAVNRELRVRN
FWTAERPEPNLLDMLHHVALGTVADVAPLVGLNRAFVAKGLIAMRRRDHVGHTALMDVAR
LNGPPEAWHLGFMLGPRINAGGRIGRADLGVQLLLEGDVSEAARIAAELDRLNVERRLIE
QAAEQQAEAEALAALGLEDKGAVIVTAAEGWHPGVVGLVASRLKEKFSRPAFAVALEPGG
IGTGSGRSIAGVDLGKAVRGAVSEGLLMKGGGHAMAAGVTLKKDRLAEFRAYLEGVLAED
VARARHLDELFVDGAVSARAVTTDFVATLNRAGPFGTGNPEPMMALPSHQLVYADEVGGA
HLRVRLKSGDGAFVNGIAFRAVGQKLGNALTDNRGQVVHVAGSLSIDRWQGAERVQFRIC
DVAVPEREPVAIR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacacctcccgccaccgcattgcccattgagacgccgcacgcctttctcggcgtgaag
cgctcggccacgggtaagctgtggcgtgaccggttagacgtgcgcggtgccgcgcaggca
ttggctatcgcgcaacgtcatcagttgccggagatgctggcgcggatcattgcgggccgc
ggcatcgacatcgatgcggtggaggattttctcgatccgaccattcgcaagctgttgccc
gatccctcgaccgtcacgcagatggaagctgcggccaagcgcctcgcagacgcggtgatg
cgcggcgagatggtcgcgatcttcggcgactacgacgttgatggcgcaacgtcgtcggcg
ctgctcgcctggcatctgcgccattgcgggctcgatccgttaatccacattccggatcgc
attttcgaaggctacggcccgaacgtcgacgcgatccgtatgctgtcgtcacgcggcgcg
aagcttctcgtcacggtcgattgcggcaccacgagccttgagccgctcgcggaagcacgc
aagctcggcatggacgtggtggtgatcgatcatcatcaatgcaacgatgaattgccgacc
gtcaacgcgatcgtcaatccgaaccggccggatgatttgtccgggctcggtcatcttgcg
gcggtcggccttgtcttcgtcacgctcgttgccgtgaaccgcgaattgcgtgtgcgtaat
ttctggacggcggagcggccggagccgaaccttctcgacatgctgcatcatgtggcgctt
ggtaccgtggccgacgtggcgccgctggttgggctcaaccgcgccttcgtcgccaagggg
ctgatcgcgatgcggcggcgtgaccatgtcggccacaccgccttgatggatgtggcgcgg
ctgaacgggccgccggaagcctggcatctcggcttcatgctcggcccgcgcatcaatgcc
ggcgggcgtatcggccgggccgatctcggcgtgcaactgcttctcgaaggcgacgtatcg
gaggcggcgcggatcgcggcggaactcgatcgcctcaatgtcgagcggcgtttgatcgaa
caggcggcggagcagcaggcggaagcggaggcgcttgccgctctcgggctggaggacaaa
ggcgcggtgattgtcactgccgccgaagggtggcacccgggcgtcgtaggcctcgtcgcc
tcgcgtctgaaggagaagttttcgcgccctgcgtttgccgtggcgctggagccggggggg
atcggcaccggctcgggccgttcgattgcaggcgtcgatctcggcaaggcggtgcgtggt
gccgtctctgaaggcttgctgatgaagggcggaggtcacgccatggcggcgggcgtcacg
ctgaagaaagaccggcttgcggaattccgcgcctatctcgagggcgtgctggcagaggat
gtcgcgcgggcgcggcatctcgatgagttatttgtcgacggcgctgtgagtgcgcgcgct
gttaccaccgattttgtcgcaacactcaatcgtgcggggccgttcggcaccggcaatccg
gaaccgatgatggcgctgccgtcacatcagttggtctatgccgacgaggttggcggcgca
catctgcgggtgcggctgaagtccggcgacggtgcgttcgtcaacggcatcgcgtttcgc
gcggtcggccagaagctcggcaacgcgctcaccgacaatcgcggacaggtcgtccacgtt
gcgggctcgctcagcatcgatcgctggcagggcgccgagcgcgtgcagtttcggatttgc
gatgtcgccgtgccagagcgcgagccagtcgcgatccgctga
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