Afipia carboxidovorans OM5 (Goettingen): OCA5_c20390
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Entry
OCA5_c20390 CDS
T01617
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Pathway
ocg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCA5_c20390 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocg03019
]
OCA5_c20390 (rne)
03009 Ribosome biogenesis [BR:
ocg03009
]
OCA5_c20390 (rne)
Enzymes [BR:
ocg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OCA5_c20390 (rne)
Messenger RNA biogenesis [BR:
ocg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OCA5_c20390 (rne)
Ribosome biogenesis [BR:
ocg03009
]
Prokaryotic type
rRNA processing factors
OCA5_c20390 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AEI06746
UniProt:
F8BW35
LinkDB
All DBs
Position
2213837..2216890
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AA seq
1017 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENENRASRRRSRHRSSRR
RSHGERVRSAIVEDSAPATEAPPAFPHDSTEPQPFGGYGYDDEPTDETVTPATVAPSVVP
SAPGRPLPSIEGNDYGDQADEGIDDPTFDYPETVDDAPATAEDHHDDHGHDDHGHDDAHD
HDHNDDHDHDDDNGEHAGETHEEHADAEHASEDAASDSDEDDDSDGEEDEQVESVGGDDA
LEEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNT
ARGGGISRKITSAQDRNRLKDVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWE
TVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEVLVSGEEGYHEARDFMKMLMPSNV
RAVKLYRDNQPLFSRMGVESQLDAMFSPVVTLRSGGYLVINQTEALVSIDVNSGRSTREH
HIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRAR
IQVGRISHFGLLEMSRQRIRASVLESSTEPCPTCGGIGHVRSVASVALQLLRSLEEQLMK
SGTHNYTVRTRTDVALYVLNHKRGHLRDLEEAFQVTLAVIADPTVGGQQAFVIERGEQVH
TVEAAKALLAARVAAQPVEVEEFDAEEEFFEEETETESAENGDTETADAQGENEDGNRRR
RRRRRGRGRGEGREASAQSAEGEASTGEDTQAEASEDGEEDSEAASARGEENGERRPRRR
GRRGGRRRRGNGNGNGDEATATAGEADTEAGEASADEGTPHNLSMPSFDAPQPDISVPIA
TENESTPAPAATAPTAAAPEADAPAHEEDKAPRRSTVREKVSFFFGEPPVADTAPATEAA
PAAAATEEQAAAPAPVETTPSESASNELASSNEMPPAEPEPAPSAPRRRGWWSRRSE
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgccgaacaaaatgttgatcgacgccacccacccggaggagacccgggtcgttgtggtc
cgcggcaaccgcgtcgaagagtttgatttcgaatccgcgcaacgcaagcagcttcgcggc
aacatctatctcgccaaggtcacgcgcgtggagccttcgctccaggccgcgttcatcgag
tacggtggcaatcgccacgggttcctcgccttcagcgaaatccatcccgactactaccag
atccccgtcgccgaccggcaggcgttgatcgaggccgacgagcgcgcgcaccgcgaggcc
gaggaagaaaacgaaaaccgcgccagccgccgccgctcgcgccaccgcagctcgcgccgc
cgcagccatggcgagcgcgtgcgcagcgccatcgttgaggacagcgcgcccgcgaccgag
gcgccgccggcgttcccgcacgattccaccgagccgcagccgttcggcggctacggctac
gacgacgagcccaccgacgagacggtgacgcccgcgaccgttgcgccctccgtggtgccg
agcgcaccgggccgccccctgccctcgatcgagggcaatgattacggcgatcaggccgac
gaaggcatcgacgatcccaccttcgactatccggagacggtcgacgacgcgcctgcgacg
gcggaagaccatcacgacgatcacggtcatgacgatcatggtcatgacgacgcgcatgac
cacgaccacaacgacgatcatgatcacgatgacgacaatggcgagcacgccggtgagacc
catgaggagcacgccgacgccgagcacgccagcgaggatgcggcctccgacagcgacgag
gacgacgacagcgacggcgaggaagacgagcaggtcgaatccgtcggtggcgacgatgcg
cttgaggaagtgccggagcgcaccttccgcccgcgccgccagtacaagattcaggaagtc
atcaagcgccgccaggtgatgctggtgcaggtcgtcaaggaagagcgcggcaacaagggc
gcggcgctcacgacctatctttcgctcgccggccgctatgccgtgttgatgccgaacacc
gcgcgtggcggcggcatcagccgcaagatcacctcggcgcaggaccgcaaccgcctcaag
gacgtggtgcaggacctcgacgtgccggaaggcatgggcatcatcctgcgcacggcaggc
gcctcgcgcaccaagccggaaatcaagcgcgacttcgaatacctcatccgcatgtgggag
acggtgcgcgacctcacgctgaagtcgcaggcccccaccctcgtctacgaggaaggctcg
ctcatcaagcgctcgctgcgcgatctctacaacaaggagatcgacgaagttctggtgtcc
ggcgaagagggctaccatgaagcgcgcgacttcatgaagatgctgatgccttccaacgtg
cgggcggtgaagctctatcgcgacaaccagccgctgttctcgcgcatgggcgtcgagagc
cagttggacgcgatgttctcgccggtcgtaacactgcgctccggcggctacctcgtcatc
aatcagaccgaagcgttggtttcgatcgacgtcaactccggccgctcgacgcgtgagcat
cacatcgaggacaccgcgctcaagaccaatctcgaagccgccgaggaagtcgcgcggcag
ttgcggctgcgcgatctcgcgggcctcatcgtcatcgacttcatcgacatggacgagaag
cgcaacaaccgcgcggtcgaacgcaagctctccgactgcttgcggcaggatcgcgcccgc
atccaggtcggccgcatctcgcatttcggccttctggaaatgtcgcgccagcgcatccgc
gccagcgtgctggaaagctcgaccgagccctgcccgacctgtggcggcatcggccacgtc
cgctccgtcgcttcggtcgcgctgcaattgctgcgcagcctcgaagagcaactgatgaag
agcggcacgcacaattacacggtgcgcacccgcaccgacgtcgcgctctacgttctgaac
cacaagcgcggccacctgcgcgacctcgaggaagccttccaggtcacgctcgcggtgatc
gccgatccgaccgtgggcggccagcaggcattcgtcatcgagcgcggcgagcaggtccac
accgtcgaagccgccaaggcacttctggccgcgcgcgttgccgcgcagcccgtcgaggtc
gaggagttcgacgccgaggaagagttcttcgaggaagagactgaaaccgaaagcgccgag
aacggcgacaccgagacggctgatgctcagggcgaaaacgaggacggcaatcgccgccgg
cgtcgtcgccgtcgtggccgcggacgtggtgaaggccgcgaggcatccgcgcagtccgcc
gagggcgaagcatccaccggcgaggatacgcaggctgaggccagcgaagatggcgaggag
gattccgaagccgcttccgcgcgcggcgaggagaatggcgagcgccgtccgcgccgccgt
ggccgccgtggtggtcgccgccgtcgtggcaatggaaacggcaatggtgacgaggcgact
gctaccgcaggcgaggcagatacagaggccggtgaagcatccgcagacgaaggcacgccg
cacaatctcagcatgccgtccttcgatgcgccgcagcccgacatctccgtgccgatcgca
acggaaaacgaaagcacgcccgcaccggcagccaccgcgccgacagccgccgcaccggag
gctgacgcccccgcgcatgaggaagacaaggccccgcgccgctccaccgtgcgcgagaag
gtgagcttcttcttcggcgagccgcccgtagccgacaccgcacctgcaacggaggctgct
ccggctgctgccgcaactgaagaacaggctgcagcgcctgcgccggttgagactacgccg
agcgagtccgcatcaaacgagctagcctcaagcaacgagatgccgcctgccgagccggag
cccgctccctccgcgccgcgccgtaggggctggtggtcacgccggtcggaataa
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