Afipia carboxidovorans OM5 (Goettingen): OCA5_c27280
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Entry
OCA5_c27280 CDS
T01617
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Pathway
ocg00470
D-Amino acid metabolism
ocg00550
Peptidoglycan biosynthesis
ocg01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
OCA5_c27280 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
OCA5_c27280 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ocg01011
]
OCA5_c27280 (murD)
Enzymes [BR:
ocg01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
OCA5_c27280 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
ocg01011
]
Precursor biosynthesis
Amino acid ligase
OCA5_c27280 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
KARI_N
MurD-like_N
2-Hacid_dh_C
AdoHcyase_NAD
ADH_zinc_N
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AEI07422
UniProt:
B6JCF7
LinkDB
All DBs
Position
complement(2906586..2907983)
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AA seq
465 aa
AA seq
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MIPITSFAGQTVAVFGLGGSGVASCRALKAGGAEVVAGDDSAERLAQAAREGFITADLRT
VSWENFAALILTPGVPLTHPRPHWTVEMARKAGIEVIGDIELFCRERRLHAPGAPFIAIT
GTNGKSTTTALTAHLMREAGFDAQMGGNIGTAILSLAPPAPQRVYVIEMSSYQIDLTPSL
DPSVGILLNVTEDHIDRHGSIEHYAEVKERLVVGVPRGGTAIVGVDDDFSTKAARAAEDT
GKHVVRVSVQRALDDGVFLDGERIVRGAAGGTAKLVDLNGIGSLRGRHNAQNAACAASAA
LALGVPFDVVQRGLASFPGLAHRMEQVGQKGEVLFVNDSKGTNADAAARALSSFTNIYWI
AGGKPKTGGIESLREFFPRIRKAYLIGEAAQEFSRTLEGVPQEISGTLDEAVPHAARDAA
ASGGHAVVLLSPACASFDQFPNFEVRGDYFRKLVLALGGVAPVKP
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgatccccatcacttcctttgccggtcagacggtggccgtgttcggcctcggcggttcg
ggcgttgcaagctgccgcgcgttgaaagccggcggggcggaagtcgttgccggtgacgat
agtgccgagcgccttgcgcaggccgcgcgggagggtttcatcaccgccgatctgcgtacc
gtgtcgtgggagaatttcgcggcgctcattctgacgcccggcgtgccgctgacgcatccg
aggccgcattggaccgttgagatggcgcgtaaagccggcatcgaagtgatcggcgatatc
gaactgttctgccgcgagcgccgccttcatgcgccgggtgcgccgttcatcgccatcacc
ggcaccaacggcaaatcgaccaccacggcgctcaccgcgcatctgatgcgcgaggcaggc
ttcgacgcgcagatgggcggcaacatcggcaccgcgatcctgtcgctggcgccgcccgcg
ccgcagcgcgtctatgtgatcgagatgtcgtcgtatcagatcgaccttacgccctcgctc
gatccgagcgtgggcatcctgctcaacgtcaccgaagatcatatcgatcgccacggcagc
atcgagcattacgccgaggtgaaggagcgccttgtcgtcggcgtgccgcgcggcggcacc
gcgatcgtcggcgtcgatgacgatttcagcaccaaggcggcgcgggcggcggaagacacc
ggcaagcatgtcgtgcgtgtctctgtacagcgtgcgctggatgacggcgtgtttctcgat
ggcgagcggatcgtacgcggcgcggcgggcggcacggccaagctcgtcgatctgaatggc
atcggttcactgcgcggccgtcacaatgcgcagaacgcggcgtgtgcggcgagtgccgcg
ctcgcgctcggtgtgccgttcgacgtggtgcagcggggccttgcgagctttcccggcctc
gcgcatcgcatggagcaggtggggcagaagggcgaggtgctgttcgtcaacgattccaag
ggcaccaacgctgatgctgcggcgcgggcgctgtcgtcgttcactaatatttactggatc
gcgggcggcaagccgaagaccggcggcatcgaatccctgcgtgagttctttccacgtatt
cgcaaggcctatctgatcggcgaagcagcgcaggagttttccaggacgctcgaaggcgtg
ccgcaggaaatctccggtacgctggatgaggcggtgccgcatgccgcgcgcgatgcggcc
gcaagcggtggccatgccgtggtgctgctgtcgcccgcctgtgcctcgttcgaccagttt
ccgaacttcgaggtgcggggcgactatttccggaagctcgtgctggcgctcggcggcgtc
gcgccggtgaagccgtaa
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